Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi917g00002 | ATGTCCAATAATTATTCATTACCTGATTCTTGCAATGTTATTAAAAGGCTTTCAGCTCCAATTGCAAGGCCAGGGTGGTATAAGGAAAATCTCAGAGATGACCTTAGTGAAGATCTTCTATTAACATGGGATAAACCTGACTGCAGATATTGTGAATCACAAGAGCTAATGTGTGGATTTGAAAGCAGTAACAGCAATAGAGTTATCTGTTTCTCTGATTCCCAAACAGATAATGCGCAACGTGGACTTCAACTCTATAGAATAATCACATTATGCATTACTATACCAGCTTCCATCTTTATTATTTTAATTGGATGCTGTGTGTGCTACCGAGACAGAATAGGCAATACTCCTCCCAATCCCAGCAATAACATTGCTGCAATATCACTGGAACCTGCCATTGCCACCACTGGTCTGGATGAATCTACCATTGAATCATATGAGAAGGTAGTACTTGGGGAGAGTCGACGAGTTCCTGGACCCAATGATGGATGTTGTTGGATATGCTTGTCAGAGTATAACAGCAAAGAGACAATCAAATTGATTCCTGAATGCAAACACTGTTTCCATGCTGACTGCATAGATGAGTGGCTTCGCATGAACAACACATGCCCAGTTTGCCGCAACTCTCCCTACCCTCTTCCTGCTATTACCTCCAGTACCAGTAACCCTTGA | 675 | 0.4133 | MSNNYSLPDSCNVIKRLSAPIARPGWYKENLRDDLSEDLLLTWDKPDCRYCESQELMCGFESSNSNRVICFSDSQTDNAQRGLQLYRIITLCITIPASIFIILIGCCVCYRDRIGNTPPNPSNNIAAISLEPAIATTGLDESTIESYEKVVLGESRRVPGPNDGCCWICLSEYNSKETIKLIPECKHCFHADCIDEWLRMNNTCPVCRNSPYPLPAITSSTSNP | 224 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi917g00002 | 224 | Pfam | Wall-associated receptor kinase C-terminal | 25 | 73 | IPR032872 | - | |
| Sebi917g00002 | 224 | SMART | ringv_2 | 165 | 208 | IPR011016 | GO:0008270 | |
| Sebi917g00002 | 224 | ProSiteProfiles | Zinc finger RING-type profile. | 166 | 208 | IPR001841 | - | |
| Sebi917g00002 | 224 | SMART | ring_2 | 166 | 207 | IPR001841 | - | |
| Sebi917g00002 | 224 | CDD | RING-H2_EL5-like | 165 | 208 | - | - | |
| Sebi917g00002 | 224 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 6 | 211 | IPR046948 | - | |
| Sebi917g00002 | 224 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 129 | 212 | IPR013083 | - | |
| Sebi917g00002 | 224 | SUPERFAMILY | RING/U-box | 162 | 210 | - | - | |
| Sebi917g00002 | 224 | Pfam | Ring finger domain | 166 | 208 | IPR001841 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi917g00002 | Sebi-Chr917 | 31277 | 33876 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi917g00002 | 1 | 214 | C3H Transcription Factor Family | AT2G25410 | 41.485 | 1.70e-52 | 172 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi917g00002 | - | - | aprc:113851081 | 310.842 |