Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi917g00001 ATGACTGCAAAGGGACAGAAATTTGTGAGGTTTGAAGATTGGAAGTCAGAGTCATCATCTTTAAGTATAGAGAAGAATGATTCTACAAGGGCCACTACTTCAGAAATGGAACAAGATTTTGTAATAACATGTGTGATGGCAATCTCTGTGGACCCGCTGTTCTTTTACATCCCTGTGATTGATGACAATAGAAAATGCCTTGACTTGGATGGAAAATTGAAGATTACTGCTAGTGTTCTTCGCACATTCTTTGATCTTTTCTACATTCTTCGCATCATCTTTCAGTTTCGAACTGGGTTCATTGCCCCTTCTTCACGTGTATTTGGAAGGGGTGAGCTGGTTCATGATCTTTCTGCCATAGTCATGAGATACTTAAGTTCTTACTTCATCATTGACATTCTATCAATTATTCCACTTCCTCAGATGGTCATTTTAGCTATCATTCCAATCCCAAAATGCTCAGCTCCATATGCAGCAAAGGATTTGTTGAAGTATACAATAATAGCCCAGTATGTGCCAAGAATTCTGCGGATCTATCCATTGTTCAAAGAAGTAACAAGCACTTCTGGCATATTGACTGAGACAGCATGGGCTGGAGCTGCTTATAATCTTTTTCTCTATATGCTAGCAAGTCATGTGGTTGGAGCTTTCTGGTATCTGTTTTCAGTAGAATCAGAGGTGCGGTGCTGGCGCGAACAGTTGAATAATACTGCCTTCTCTCATGATTCCTACCTGAGCTGTGGAGGAGGCAATCCTATTGTTCTATCAATTCTCAATAGTACTAGTTCTTGCCCTTACATTGACCCTGATAACATTGAAGACCAAACAGTTTTCAATTTTGGAATATTTATAGAAGCTGTAAAGTCTCGTGTGGTAGAGTCATCTAAAGATTTTCGTAAGAAGTTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATGTAAGTTCTGTTGGGCAAAACCTCAAGACAAGTACTTATGTTGGGGAGATAATCTTTGCTATCTTCATTGCCACCTTTGGATTGGTTCTGTTTGCATTACTTATTGGAAACATGCAGAAATATCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAGTCAAAAGGAGGGATGCAGAACAGTGGATGTGCCACCGGATGCTACCTGACTTCTTGAAGCAAAGAATTAGACGGTATGAACACTACAAATGGCAAGAAAATAGGGGTGTTGAGGAGGAGACATTAATTCGGAACCTCCCTAAAGATCTCAGAAGGGACATAAAGCGCCATCTTTGCTTAGATTTACTTAAAAAAGTGCCAATGTTTGAGAACATGGATACACAATTGTTGGATGCAATGTGTGATAGACTGAAGCCAGTCCTTTATACAGAGAAAAGTGACATTGTTCGTGAAGGAGATCCAGTTGATGAAATGCTCTTCATTATGCGTGGAAAACTTGCTACTGCCACAACAAATGGTGGAAGAACAGGTTTCTTCAACTCCTCTGTGCTCAAGGCTGGTGACTTTTGTGGAGAAGAGCTTTTGACATGGGCCTTGGATCCAAACTCCTCCTCAAATCTACCCATTTCAACTAGAACAGTGCAAACTATCTCAGAAGTTGAAGCTTTTGCTCTCATGCCTGAAGACTTGAAGTTTGTTGCTTCCCAATTTAGACGTCTTATTAACAGCAAACAACTCCAGCATACTTTCAGGTTCTATTCCCTGCAATGGAGGACATGGGGTGCATGTTTCATACAAGCAGCTTGGCGTAGATACAAGAGAAAGAAGACTGATAGGTTATTTCGTGAAGCAGAAGAGAAGCTACATGCTTTAGAAAATGAGGAAGGGTCCTCACCAAGCTTTGTTGCCACTGTATATGCATCAAGGAGGAAGGTTGCGGTTGGGTTCTTCCATCCGTACACCAACGACGGCGGCGGCGGAGAACGGGTTCTGTGGTGCGCCGTCAGAGCCATACAAGACGATAACCCTCACCTTCCCTGCCTCGTCTACACCGGAGATCACGATGCCACCCCTCAAACGTTGATGGCTCGAGCCCTTGATCGCTTTGGGGTCACCCTCCTCTCCCCTCCCAAGGTGGTGCATTTGTACAAGAGAAAGTGGATTGAAGAAACCACTTATCCGCACTTTACTATGATTGGTCAAAGTCTTGGTTCTATGTATCTTGCATGGGAAGCGTTGTGCAAGTTTACCCCTTCATATTATTTTGACACAAGTGGATATGCTTTTACTTATCCCCTTGCTCGGTTGTTTGGATGCAAAGTTATTTGCTATACACATTACCCTACTATCAGTTCAGACATGCTATCTCGTGTTCGACAACGCAGCTTGATGTATAATAATGATGCCTTGATTGCAAAAAGTGTTTGGCTTTCTCGGTGCAAAACGGTCTATTATACATTCTTCAGCTGCTTGTATGGGATTGTAGGATCTTGTGCACACCTAGCTATGGTCAATTCATCTTGGACCAAATCCCATATTGAAAAGCTTTGGGGAGTTCCAGATCGTATTAAGCGAGTCTATCCTCCTTGTGATACTTCAGGACTTCAGGTTCTTCCTTTGGAAAGATCAGCGGAAATTCCTGTAATAATATCTGTTGCACAATTTCGACCAGAGAAGGCTCACGGCCTCCAACTTGAGGCCTTTGCAGCTGCCATTAGCAGATTAGATTCTGGCTTGCCAAAACCTAAGCTACAAGTTGTGGGTAGCTGTAGAAATAGATCAGATGAGGAAAGACTCCAGATGTTAAAAAAGAAAGCAATTGAGCTGAATGTGAATGAACAAGTGGAATTTTATAAGAATGTGACATACAGAGATTTGGTGGGACTTTTAGGTGGCGCTGTTGCTGGCATCCATTCCATGACAGATGAGCATTTTGGCATCAGTGTTGTAGAATATATGGCTGCTGGTGCCATCCCAATTGCTCATAATTCCGCTGGCCCAAAAATGGACATTGTGTTAGATGAAGATGGACAACAAACAGGATTCCTTGCATGCACAGTTGAAGAATATGCAGACGCCATGTTGAGAATTATAAGGATGCCTGAGATGGAGAGACTTGAGATGGCTGCTGCTGCAAGGAGACGAGCAAGTAGGTTTTCTGAGCAGAAGTTTTATGATGACTTCAAATCTGCAGTTCGCCCTATTATCTGTCATGTTTCTAGATGA 3162 0.4231 MTAKGQKFVRFEDWKSESSSLSIEKNDSTRATTSEMEQDFVITCVMAISVDPLFFYIPVIDDNRKCLDLDGKLKITASVLRTFFDLFYILRIIFQFRTGFIAPSSRVFGRGELVHDLSAIVMRYLSSYFIIDILSIIPLPQMVILAIIPIPKCSAPYAAKDLLKYTIIAQYVPRILRIYPLFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSVESEVRCWREQLNNTAFSHDSYLSCGGGNPIVLSILNSTSSCPYIDPDNIEDQTVFNFGIFIEAVKSRVVESSKDFRKKFFYCFWWGLRNVSSVGQNLKTSTYVGEIIFAIFIATFGLVLFALLIGNMQKYLQSTTVRVEEMRVKRRDAEQWMCHRMLPDFLKQRIRRYEHYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLDLLKKVPMFENMDTQLLDAMCDRLKPVLYTEKSDIVREGDPVDEMLFIMRGKLATATTNGGRTGFFNSSVLKAGDFCGEELLTWALDPNSSSNLPISTRTVQTISEVEAFALMPEDLKFVASQFRRLINSKQLQHTFRFYSLQWRTWGACFIQAAWRRYKRKKTDRLFREAEEKLHALENEEGSSPSFVATVYASRRKVAVGFFHPYTNDGGGGERVLWCAVRAIQDDNPHLPCLVYTGDHDATPQTLMARALDRFGVTLLSPPKVVHLYKRKWIEETTYPHFTMIGQSLGSMYLAWEALCKFTPSYYFDTSGYAFTYPLARLFGCKVICYTHYPTISSDMLSRVRQRSLMYNNDALIAKSVWLSRCKTVYYTFFSCLYGIVGSCAHLAMVNSSWTKSHIEKLWGVPDRIKRVYPPCDTSGLQVLPLERSAEIPVIISVAQFRPEKAHGLQLEAFAAAISRLDSGLPKPKLQVVGSCRNRSDEERLQMLKKKAIELNVNEQVEFYKNVTYRDLVGLLGGAVAGIHSMTDEHFGISVVEYMAAGAIPIAHNSAGPKMDIVLDEDGQQTGFLACTVEEYADAMLRIIRMPEMERLEMAAAARRRASRFSEQKFYDDFKSAVRPIICHVSR 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi917g00001 1053 Gene3D Helix hairpin bin 360 424 - -
Sebi917g00001 1053 Gene3D - 39 357 - -
Sebi917g00001 1053 Pfam Glycosyl transferases group 1 859 1025 IPR001296 GO:0016757
Sebi917g00001 1053 ProSiteProfiles cAMP/cGMP binding motif profile. 433 517 IPR000595 -
Sebi917g00001 1053 CDD CAP_ED 433 565 IPR000595 -
Sebi917g00001 1053 CDD GT4_ALG11-like 624 1039 IPR038013 GO:0004377
Sebi917g00001 1053 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 626 1043 - -
Sebi917g00001 1053 Coils Coil 904 924 - -
Sebi917g00001 1053 SMART cnmp_10 433 564 IPR000595 -
Sebi917g00001 1053 Coils Coil 586 606 - -
Sebi917g00001 1053 FunFam GDP-Man:Man(3)GlcNAc(2)-PP-Dol alpha-1,2-mannosyltransferase 850 1031 - -
Sebi917g00001 1053 FunFam Cyclic nucleotide-gated ion channel 1 360 424 - -
Sebi917g00001 1053 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 17 622 - -
Sebi917g00001 1053 Pfam ALG11 mannosyltransferase N-terminus 624 829 IPR031814 -
Sebi917g00001 1053 Gene3D Jelly Rolls 431 551 IPR014710 -
Sebi917g00001 1053 FunFam Cyclic nucleotide-gated ion channel 1 431 549 - -
Sebi917g00001 1053 Pfam Ion transport protein 41 361 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Sebi917g00001 1053 SUPERFAMILY Voltage-gated potassium channels 41 355 - -
Sebi917g00001 1053 Gene3D Glycogen Phosphorylase B; 847 1031 - -
Sebi917g00001 1053 SUPERFAMILY cAMP-binding domain-like 362 549 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi917g00001 Sebi-Chr917 20121 30755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi917g00001 40 621 Ion Channels AT1G01340 67.343 0.0 819
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi917g00001 K05391 - gmx:100795201 1039.25