Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi916g00015 ATGTTTGTTGGTGTTGATGCATTTCAGAGGATTTATGGTGAGACAAAGGATAAATTCATTGCTCGCAAGTTGTTCAATAAAATTCCCCAACGAAGTGTCGATGCTTGGAACTCTATGATCTCGGGTTATAAGCGAAACCGGTTTGCCAATGAAGCAATTGAGTTGTTTCACAAGATGTGTGAATCTGGTTTTGTCTCTGATCCCGCAACTATTGTTAGTGTTTCTTCTGCTTGTTCTCAACTGGGTTCTAAGTGCCCCTTTGTTGGGATTGACATCTTCACTGCCAAGAAGCTTGAAGGTATTGTGCCCTCTTCTCACAACTATGATGTTCCCCATGTGAATCGTACTGACTACCAGCTCATTGATATTTCTAAGGATGGATTTGTTAGTTTTCTTATTGAAAATGGCTTGGCTGGATTTGTTACTGCAATCAACCAAGCTTCTCTTCCTCCCAGTGTCTTTAGTCGCAGCTCATTCTCATTTCGCTCTATCTCCCAGATGGAAACTCCAATGGAATTTTGGGGTGTTGAGGTTAAGGTTGTGCAATCTGTTAAAGTAGACCCAACGGATGAATTGATTGGATACATACACATTTCTCAGGTTGCACTTGGGGAGGCAAAGAAAGGCAAAACAAATGAATATGATGTTTTGTACTTGAAAGTTGATGACCAGAAGTTTGTTTTGGGAACTCTTACTAGGGATGATATCCCCCAACTATCTATGGATTTAGTTCTGGACAAGTTTTCTGAGCTTTCACACAATTCAAGAAATGCTCATTACGTGCGTGGCCTTTGGCCTTCAACTATTTTCACTCAAGAGCTTCAAGAAAAGAGGTTGATGCACAATCTTCATCAGTATGAGGTTCCTCTGCATAGGTACATGGCCATGATGGATCTTCAAGAGAGGAATGAAAGGTTGTTTTATAAGCTTCTGATTGATAATGTTGAGGAACTTCTTCCTATTGTTTATACTCCAACGGTTGGAGAAGCCTGCCAGAAATATGGAAGCATTTTCAGGCGTCCTCAGGGTCTATATATCAGTTTAAAGAAGAAAGGAGGTGTCCGCCCTTCATCATGCTTGCCTGTAATGATTGATGTTGGCACAAACAATGAGAAGTTGCAGAATGATGAGTTTTACATTGGAGTTAGACAAAAGAGGGTTACATGGAAGGAATATCAGGAACTTCTAGCCCCGGGTTGA 1200 0.4092 MFVGVDAFQRIYGETKDKFIARKLFNKIPQRSVDAWNSMISGYKRNRFANEAIELFHKMCESGFVSDPATIVSVSSACSQLGSKCPFVGIDIFTAKKLEGIVPSSHNYDVPHVNRTDYQLIDISKDGFVSFLIENGLAGFVTAINQASLPPSVFSRSSFSFRSISQMETPMEFWGVEVKVVQSVKVDPTDELIGYIHISQVALGEAKKGKTNEYDVLYLKVDDQKFVLGTLTRDDIPQLSMDLVLDKFSELSHNSRNAHYVRGLWPSTIFTQELQEKRLMHNLHQYEVPLHRYMAMMDLQERNERLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIFRRPQGLYISLKKKGGVRPSSCLPVMIDVGTNNEKLQNDEFYIGVRQKRVTWKEYQELLAPG 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi916g00015 399 Gene3D Tetratricopeptide repeat domain 6 110 IPR011990 GO:0005515
Sebi916g00015 399 Gene3D - 238 352 IPR037062 GO:0004471
Sebi916g00015 399 Gene3D - 353 398 IPR037062 GO:0004471
Sebi916g00015 399 SMART malic_2 300 393 IPR012301 GO:0004471
Sebi916g00015 399 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 244 395 IPR046346 -
Sebi916g00015 399 PANTHER MALIC ENZYME-RELATED 352 396 - -
Sebi916g00015 399 Pfam PPR repeat 35 64 IPR002885 -
Sebi916g00015 399 Pfam Nucleoplasmin-like domain 173 259 IPR041232 -
Sebi916g00015 399 SUPERFAMILY Translation proteins SH3-like domain 68 120 IPR008991 -
Sebi916g00015 399 Pfam Malic enzyme, N-terminal domain 300 351 IPR012301 GO:0004471
Sebi916g00015 399 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 32 66 IPR002885 -
Sebi916g00015 399 NCBIfam pentatricopeptide repeat 35 67 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi916g00015 Sebi-Chr916 213230 214578 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi916g00015 68 136 Eukaryotic Initiation Factors Gene Family AT1G13950 67.123 9.25e-25 97.8