Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi916g00008 ATGAAAGAGGGAAGAATTTTGAGTGTCAAGGTGAAGAAGCATTTGAAAAATGGGAAATATGTTTCTTCGGGGTATGGATTTGTTGAGTTTGACTCCACAGAGATTGCTACAAATGTTTGTAGTGATTTACAGGGTACTGATTTGGACGGACTTGCTCTTAGATTACAACTCTGTCGTGTCAAGAATGATGGACACGTACCAATGACTGTTGAAAAGGGTTACAGTTCAACAAAATTGCTCATAAAAAATGTTCCTTTTGAGGCAACGAAGAAGGATCTAAAAGATTTGTTATGCGCCTTTGGCAAGATTAAATGCCTCAGGTTGCCAAGGAAGTTTGGAGGTAGTAGAGGCTTTGCTTTCGTAGAGTATGTTACTCAGCAGGAGACACAAAATGCTCTTAAAGCACTTTTTAACATCCACTTTCTTGAAAGGCATCTGGTGATAGAGAGAGCAAAAGAAGCTGAGAGTTTGGATGAACTGCGGGCTCGAACAGCTGCTCAATTTAGTAAAGATAATGGATTTCAAAATGCTACTAAGTTATGCAAGAAAAGGAAGCACATAAGTATCTTAGATGAAGAAAACATGTAG 588 0.3861 MKEGRILSVKVKKHLKNGKYVSSGYGFVEFDSTEIATNVCSDLQGTDLDGLALRLQLCRVKNDGHVPMTVEKGYSSTKLLIKNVPFEATKKDLKDLLCAFGKIKCLRLPRKFGGSRGFAFVEYVTQQETQNALKALFNIHFLERHLVIERAKEAESLDELRARTAAQFSKDNGFQNATKLCKKRKHISILDEENM 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi916g00008 195 CDD RRM6_RBM19_RRM5_MRD1 77 151 - -
Sebi916g00008 195 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 75 162 - -
Sebi916g00008 195 SMART rrm1_1 78 149 IPR000504 GO:0003723
Sebi916g00008 195 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 53 IPR000504 GO:0003723
Sebi916g00008 195 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 79 141 IPR000504 GO:0003723
Sebi916g00008 195 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 60 IPR000504 GO:0003723
Sebi916g00008 195 Gene3D - 1 65 IPR012677 -
Sebi916g00008 195 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 77 153 IPR000504 GO:0003723
Sebi916g00008 195 Gene3D - 68 177 IPR012677 -
Sebi916g00008 195 SUPERFAMILY RNA-binding domain, RBD 3 153 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi916g00008 4 163 Eukaryotic Initiation Factors Gene Family AT1G71770 31.548 7.79e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi916g00008 K14787 - cit:102613427 266.159