Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi916g00006 ATGCTTTCATCAACCAAACAGGTGGCTCAAGGACTTGGTGATACAAATCTTCCTCGTCCTTGGAGTCGATATTCTAAAAATAAAGAAAATGAAGTGACCACGCCAGATGCAAACAAGCATGCTAGAACTAAAGGACAAGGAGGCAAGTCTAAGGACATTGTTGATATTAATGACGCACAACTTCAAGATTTTCTTCAGGTAATGGAACCTCGAACTAGAGGTAAACTGTGGGCAAATGATACATGGATTGTATCGAATGTTGGCAACAACCAAGGAGTATCAAATAAGGATAGTAAAGGCACATCAGATTCAAGTGAAGATACTTGTGGAAAGGGTGTTACCAATGATAAAGCTCAAGTGAAGCAAGAGGGGCAATCATCAAATCCTGAAGATGAGAAAGGAGTTTTTGAGTCTTCTCGACTGTTTGTCCGTAATCTGCCATATACAACCACTGTGGAAGAACTGCAAAATCATGTTGAGGAAGAATTGCAAAAGCATTTCAGTAAGTTAAAACGTGTCACAGAGGTTCATCTAGTTGTTGATAAAAATACAAAACAACCTAAAGGAATAGCATATATTCATTTTTCAGATCCAGAATTTGCAGCCAGGGCGCTTAAAATGTTAGATGGTTCAATCTTTCAAGGAAGATTGTTGCATGTTATGCCAGCCATACAAAGGCCTTCAAACAATAAAGATAACAATGTCTCAAAGAACAAAAAGTCTCAAACTTTCAAGCAACACAGAGAGGAAAAGAGGAAAGCAGCTGAAGCTACCGGAGATACTAAAGCATGGAATAGTTTGTTCATGCGCCGTGATACAATTATGGAATACATTGCTCGGAAATATGATGTCAGTAAAAGTGATTTACTTGACCGAGAAGCTGATGATCTTGCGGTGCGCATTGCTCTGGGAGAAACTCAAGTGATTTTAGAGACAAAAAAGGCACTTACTAACGTCGGAGTGAATGTGGAGTCTTTGGAGGAACTTGCTAATGTTAAAGGTGATGGTGTGAAAAGAAGTAATCACGTGCTTTTAGTGAAGAACTTGCCCTTTACTTCGACAGAAAAAGAACTTGCAAGGATGTTTGGGAAATTTGGTAGTTTGGATAAAATAATTCTCCCTCCAACAAAAACTTTGGCCCTG 1143 0.3902 MLSSTKQVAQGLGDTNLPRPWSRYSKNKENEVTTPDANKHARTKGQGGKSKDIVDINDAQLQDFLQVMEPRTRGKLWANDTWIVSNVGNNQGVSNKDSKGTSDSSEDTCGKGVTNDKAQVKQEGQSSNPEDEKGVFESSRLFVRNLPYTTTVEELQNHVEEELQKHFSKLKRVTEVHLVVDKNTKQPKGIAYIHFSDPEFAARALKMLDGSIFQGRLLHVMPAIQRPSNNKDNNVSKNKKSQTFKQHREEKRKAAEATGDTKAWNSLFMRRDTIMEYIARKYDVSKSDLLDREADDLAVRIALGETQVILETKKALTNVGVNVESLEELANVKGDGVKRSNHVLLVKNLPFTSTEKELARMFGKFGSLDKIILPPTKTLAL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi916g00006 381 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 219 IPR000504 GO:0003723
Sebi916g00006 381 MobiDBLite consensus disorder prediction 87 112 - -
Sebi916g00006 381 MobiDBLite consensus disorder prediction 226 240 - -
Sebi916g00006 381 MobiDBLite consensus disorder prediction 87 136 - -
Sebi916g00006 381 SMART rrm1_1 140 221 IPR000504 GO:0003723
Sebi916g00006 381 MobiDBLite consensus disorder prediction 1 53 - -
Sebi916g00006 381 MobiDBLite consensus disorder prediction 242 257 - -
Sebi916g00006 381 Gene3D - 335 381 IPR012677 -
Sebi916g00006 381 MobiDBLite consensus disorder prediction 24 51 - -
Sebi916g00006 381 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 139 225 IPR000504 GO:0003723
Sebi916g00006 381 Gene3D - 86 238 IPR012677 -
Sebi916g00006 381 PANTHER RNA-BINDING MOTIF PROTEIN 14B 44 257 - -
Sebi916g00006 381 MobiDBLite consensus disorder prediction 225 257 - -
Sebi916g00006 381 SUPERFAMILY RNA-binding domain, RBD 138 376 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi916g00006 Sebi-Chr916 161658 164799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi916g00006 116 223 Eukaryotic Initiation Factors Gene Family AT2G36660 32.407 8.14e-10 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi916g00006 K14787 - gmx:100796243 372.089