Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi915g00006 ATGAACTATATGTTTCTTCTCCTCGTCACTTTCAAGATTATAAAGAAGGTCGCAAAGGTACAAGAGATTATGGGTTTTCAAACATCACATAGCACTAAGCGGATAACACAGCCTGTTTTGAAAGCAAAGGAGGACTCAAGCGATGCTCATGAACGCTCTTTAATTCCAAGGGCACTTAACTTCCTAACCAATACCAAGCCCATTCCCTCCTCAGGCTATGATTCATGGGTGGTAAGGCACCCTTCTGCACTGAACTCGTTTGATAGATTGATGAAAGCAGCCACTGGGAAGAGGATCGTCGTTTTTTTAGACTACGATGGTACATTATCACCCATTGTAAATGACCCTGATCGCGCTTTCATGTCTGAGGAGATGCGTGCAGCAGTACGTGAAGTTGCTACTTATTTTCCAACGGCAATAATTAGTGGAAGAAGTAGAGATAAGGTAAAAGACTTCGTAAAGTTGGATAATTTATATTATGCTGGGAGCCATGGGATGGACATAATGGCACCATCAATGCCAGTTAGATCTTCTGACGGCAAGCATTTTGACATTGCCCTTCAAACAAATGGCAACGAAGTTCTCTTTCAACCTGCGAAGAAGTTTTTGCCTGCAATTCGAGAGATATTAAGAGGTCTAGAGAATGGAGTAAAGGAGATACAAGGTGCAAAGGTAGAGGACAACGGATTCTGCATCTCTGTACATTTCCGGCAGGTTCATGAAAAGGATTATAACGTTTTGGAAGAGAAAGTGAAGTCTGTGCTTGAAAAAAATCCGCAATTTTGCTTAACTGAGGGTAAAAAGGTTATGGAAATAAGGCCATCTATAGAATGGAACAAAGGTAATGCTGTAGAATATTTTCTTGACACATTAGGATTAAGCAGTTCCAACAACATCCTTCCTGTGTATATTGGCGATGATAGAACTGATGAAGATGCTTTTAAGGCCATACAGAGTAGAGGGCAAGGTTATCCAATTATAGTGACTTCAGTTCCAAGAGAAACAAATGCTTTGTACTCTTTGCGTGACCCATCAGAAGTATTAGTCTTCTTGTCACAGCTGGCAAAATGGAGGAAAACCTCTTACTCAAGCAGGCCTTTAAATTTTGGTTAA 1113 0.407 MNYMFLLLVTFKIIKKVAKVQEIMGFQTSHSTKRITQPVLKAKEDSSDAHERSLIPRALNFLTNTKPIPSSGYDSWVVRHPSALNSFDRLMKAATGKRIVVFLDYDGTLSPIVNDPDRAFMSEEMRAAVREVATYFPTAIISGRSRDKVKDFVKLDNLYYAGSHGMDIMAPSMPVRSSDGKHFDIALQTNGNEVLFQPAKKFLPAIREILRGLENGVKEIQGAKVEDNGFCISVHFRQVHEKDYNVLEEKVKSVLEKNPQFCLTEGKKVMEIRPSIEWNKGNAVEYFLDTLGLSSSNNILPVYIGDDRTDEDAFKAIQSRGQGYPIIVTSVPRETNALYSLRDPSEVLVFLSQLAKWRKTSYSSRPLNFG 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi915g00006 370 Gene3D - 199 366 IPR023214 -
Sebi915g00006 370 Gene3D - 99 186 IPR023214 -
Sebi915g00006 370 FunFam Trehalose 6-phosphate phosphatase 199 275 - -
Sebi915g00006 370 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 33 363 IPR044651 GO:0004805|GO:0005992
Sebi915g00006 370 NCBIfam trehalose-phosphatase 96 355 IPR003337 GO:0003824|GO:0005992
Sebi915g00006 370 SUPERFAMILY HAD-like 100 358 IPR036412 -
Sebi915g00006 370 FunFam Trehalose 6-phosphate phosphatase 204 362 - -
Sebi915g00006 370 Pfam Trehalose-phosphatase 102 345 IPR003337 GO:0003824|GO:0005992
Sebi915g00006 370 NCBIfam HAD-IIB family hydrolase 101 317 IPR006379 -
Sebi915g00006 370 FunFam Trehalose 6-phosphate phosphatase 99 185 - -
Sebi915g00006 370 Coils Coil 237 257 - -
Sebi915g00006 370 CDD HAD_TPP 100 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi915g00006 Sebi-Chr915 102763 106156 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi915g00006 97 366 Trehalose Biosynthesis Gene Families AT1G23870 26.573 3.69e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi915g00006 K01087 - gmx:100819120 589.726