Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi913g00010 ATGTGTAATACTAATATCCTTTACCCTTATAAGAACCATTTGTTAATCTTCATGATGGTTCTTTCTCTACTTACCAATGTTCAAGCCCAAGGTAGGCAAGAACAACAGAACATGCCTGATTTACCCCAAAGTGTCCATCCAAGCAAAGGGATTGTAATAATAGCCCTTTCCATAATGTTTGCCATAACATTTCTCTTACTAGCCTATGTTAAATTCTGTCGAGTTAACCAAAACACCAATCTCCAAAACACTCATTTACTACCTAGATCAAGGTCTAGATTTTCTGGGATTGAAAGAGAAGTAATTGAAACACTTCCTTTCTTCAAGTTTTCTTCCCTTAAGGGATTCAAACAAGGTCTAGAATGCACTGTTTGTCTATCCAAATTTGAGGACACAGAGATTCTCAGATTGTTACCAAAGTGCAAGCACGCTTTCCACATGAATTGCATTGACAAGTGGCTTGAAAACCACTCTACATGCCCTCTTTGCAGGTACAGGGTTGAAGCAGGGGACATCAAGAATCTCAACTATTCATTGAGCTCAAGGTTCATGAGAGTTCCTTCAAATCTAACTGAGGACTCAAATCTTGAAATCTTTGTCCAGAGGGAGCCATCTTATAGTAGAGGGTCATCAAAAAGAAGCAAGAGCAAGAAAGAAGAAGTTTTTGTTGATCTTGATCAAGAAGGTGATAATTATAATAGAAAGTGGAAACATGTGAACATGATCAATCATAGAATAGTCATAAGTGATGTTGTTACTAGGAGGAGGTGGAGTGATCTTAATTCTTCAGATTTGTTATCTTTGAATTGTGAGATGCTGAATGATATGTGTAGCACAAGATTCTCTCTCTCTCCTTTGGAATCTCCTAATGGTGAAAGGTTTCAACAGGGAAATTCAAATGTTCCTTCTACTTCCTATGAGGAAGAAAATTCATTTACGGCACTGAATCCAGCAGAGAAGAGGTCCATGTCTGAGATTGCGAATGTTCCAAGGTTTGTGGAAATTGGAAAAAGGAATAGGATTAGAGAATGTGTTGGAAGCGAAGAGAGGCTGTGGAGGATTTGGTTGCCAATTGCGCGAAGAACAGTACAATGGTTTGCAAGACAAGAAAGAAATCCAGATGAATTACAACACAAACCTTTAGCTTCAAACGTTTGA 1158 0.3826 MCNTNILYPYKNHLLIFMMVLSLLTNVQAQGRQEQQNMPDLPQSVHPSKGIVIIALSIMFAITFLLLAYVKFCRVNQNTNLQNTHLLPRSRSRFSGIEREVIETLPFFKFSSLKGFKQGLECTVCLSKFEDTEILRLLPKCKHAFHMNCIDKWLENHSTCPLCRYRVEAGDIKNLNYSLSSRFMRVPSNLTEDSNLEIFVQREPSYSRGSSKRSKSKKEEVFVDLDQEGDNYNRKWKHVNMINHRIVISDVVTRRRWSDLNSSDLLSLNCEMLNDMCSTRFSLSPLESPNGERFQQGNSNVPSTSYEEENSFTALNPAEKRSMSEIANVPRFVEIGKRNRIRECVGSEERLWRIWLPIARRTVQWFARQERNPDELQHKPLASNV 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi913g00010 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 96 172 IPR013083 -
Sebi913g00010 385 Pfam Ring finger domain 121 164 IPR001841 -
Sebi913g00010 385 MobiDBLite consensus disorder prediction 288 319 - -
Sebi913g00010 385 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Sebi913g00010 385 SUPERFAMILY RING/U-box 102 168 - -
Sebi913g00010 385 MobiDBLite consensus disorder prediction 288 318 - -
Sebi913g00010 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 30 371 - -
Sebi913g00010 385 CDD RING-H2_EL5-like 121 164 - -
Sebi913g00010 385 SMART ring_2 122 163 IPR001841 -
Sebi913g00010 385 FunFam RING-H2 finger protein ATL43 97 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi913g00010 Sebi-Chr913 89346 90503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi913g00010 47 374 C3H Transcription Factor Family AT2G20030 42.938 1.31e-79 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi913g00010 K10664 - gmx:100816668 469.544