Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi913g00004 ATGGAGAGGATCATCGGAGGAAAATATAAGCTTGGTCGGAAAATTGGGAGCGGTTCATTCGGTGAAATTTATATAGCCTCAAATATTGACACCGCTGAGATTGTCGCCATTAAGATGGAAAACAAGAAGACCAAACATCCACAACTATTGTATGAGGCCAAGTTATACAGTATTCTTCAAGGAGAAAATGGTATTCCAAGTATGAAATGGTGCGGTACTGATGGAGACAATAATGTTCTAGTTATTGATCTTCTGGGAAGGAGTCTTGAGGACTTTTTTGTCTATTGCGGGCGGAAGTTTTCGTTAAAAACGGTTTTGATGTTGGCCGATCAGATGCTTTCGAGAATAGAGTATGTGCATTCCAAGGGGTTTTTGCATAGAGACATCAAACCGGATAACTTCCTTATGGGTCTTGGAAGGAAAGCAAGTCAGGTTTATGCCATTGATTTTGGACTTGCAAAAAGATATAGAGACCCTAAAACAAATAAGCATATTCCTTACAGAGAGAATAAAAACTTAACAGGGACCGCACGTTATGCAAGTTGCAACACTCACATAGGAATTGAGCAAAGTCGTCGTGATGATTTGGAGTCTCTTGGCTATGTTCTCATGTACTTTTTAAGAGGAAGCCTTCCTTGGCAGGGTCTGAAAGCTGTCACCAAAAAGGAAAAATATGACAAGATTTGTGAGAAGAAGTTATCAACTCCCATTGAGGCATCTGCTGTGCCTAGCAGTCTAGAACCCGTGGTTGTGGAAAAGCATAAAGGAGTCAATGATTCAGCTCAAATTACTGTAACAAAACTGTTGGCCAATCATGATCGCCCAAGTGCGCATGTGCAGCCTAAGCCATCTAATGTTCAGAATCTGAATGCCAAGAATCAAACCAAGAAGATTGGTGTGACTGGGAACTACAGTCCATCAACTTCATCTGCTATGCCCAAATCCTCTACAGAAAATGTCTCAAAACCAGAAAGGGCCACAGAAACCTCAAACCTGGGTCGTGTATTTGGGAGTAATTCTCGTGTTTCAAGCAGTTGGATTCCTTCACTACGCAGAATTTCTTCAGCCAAATAG 1074 0.4134 MERIIGGKYKLGRKIGSGSFGEIYIASNIDTAEIVAIKMENKKTKHPQLLYEAKLYSILQGENGIPSMKWCGTDGDNNVLVIDLLGRSLEDFFVYCGRKFSLKTVLMLADQMLSRIEYVHSKGFLHRDIKPDNFLMGLGRKASQVYAIDFGLAKRYRDPKTNKHIPYRENKNLTGTARYASCNTHIGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAVTKKEKYDKICEKKLSTPIEASAVPSSLEPVVVEKHKGVNDSAQITVTKLLANHDRPSAHVQPKPSNVQNLNAKNQTKKIGVTGNYSPSTSSAMPKSSTENVSKPERATETSNLGRVFGSNSRVSSSWIPSLRRISSAK 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi913g00004 357 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Sebi913g00004 357 PANTHER CASEIN KINASE-RELATED 8 245 - -
Sebi913g00004 357 Gene3D Transferase(Phosphotransferase) domain 1 1 318 - -
Sebi913g00004 357 ProSiteProfiles Protein kinase domain profile. 9 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi913g00004 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Sebi913g00004 357 SMART serkin_6 9 286 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi913g00004 357 MobiDBLite consensus disorder prediction 278 357 - -
Sebi913g00004 357 MobiDBLite consensus disorder prediction 275 357 - -
Sebi913g00004 357 FunFam CK1 family protein kinase 1 246 - -
Sebi913g00004 357 SUPERFAMILY Protein kinase-like (PK-like) 4 238 IPR011009 -
Sebi913g00004 357 Pfam Protein kinase domain 9 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi913g00004 Sebi-Chr913 61338 66685 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi913g00004 9 300 EF-hand Containing Proteins AT4G23650 25.890 1.19e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Sebi913g00004 Pkinase 1.6e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi913g00004 K08960 - gmx:100792736 450.669