Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi912g00003 ATGGCTGCTGTGACTGGGGTGTTTGATGCTGTGAAAAATATTTACCGTGGGAAAGAGACGTGGAGGCTTAAAGTGCGTGTTGTAAGGATGTGGGTGATATGTGCAAAGGAAAATCCCTCTAATGTTTTCTCGGTTGAAATGGTTTTAGTGGATGCGGAGGGTGGAAGATTTCAAGCAAGCATTAGGAAAGCTATGCTGAAGAAGTTCATGGGTAACGTGGTTAAGGGTGCTGTCTATAAGATGTCATTTTTTGGTGTCATTGACAATCTTGGGACTTATAGGGCAACTACCCATGACTACAAGCTGCTGTTCCAACCTAGGACCAAGGTTTATCCTTGTGAGAATTTCATGGTTGTCTTGACAGCTGTCAGTGAAGAAAAACAGTATGAAAAATTCAATAGAACCATAAGAGTGCTTGAGTTGGAGCTCACTGATGACAAGGGTGTTGTTAGGTGCTCATTGTTTGGGCATTTCATTGATCTCATGAAAGATTACTTGAAGAATCGTTCTATTGATGAGCTCGATATTGTGGTCATACAATTTGCTAGGCTTAAGAGTTACATGGGTAAGAATTATCTCCACAGTTTGAGTAACTCCACTAGGGTGCTTTGGAATCCTCAGATTGAGGAGGCTATCTCTTTTAGGAATGGCATTGCCTTTCATGGCTTTGATTTGCATGCCTCCATACAAATGATTGGTGAGAATGACCGGCCTTATTCACTCAGGGAGGAGTTCATCAATCATTTTCCTAGGAAAGGTATTGAGGATCTTCAACTTATGGAGGAGGATGGGTTATTCATTTGCCTTGCAAGTGTTGGTGGAATTGTGAAGAATGATATGTGGTGGTATAACGCCTGTAAATGCCACAAGGCAGTTACTTATGATGATGATACTAACACTTATTATTGTGTTGGGTGTGAGGTTAATGTTTCTGATGTTACTCCAAGGTTTAGACTGAGGCTGGATGTTAATGACATCACTGAAAGGGCTGAATTTGTCATCTTTGATCATAATGCATCTTTTTTGCTCTCCAAGACATCTGATTTTGATGTGCTTATTGGCAAGGAACTGCTCTTTAAAGTAGAGGTAAAAGAGGATCGTGCCTTTAAATGGGATGATTCCTTTAAGGTTAAGAAATTGTGTTCTGATGAAGCTATTATAAAGGAATTCAAGGAGGAATCTCCAATCAAGATCCCTGAGAAGTCTACCTTCAAGACAACTCTCACTGAGCTGCCTGGTGAAAAGTTATCCGCTGAGGGTGCTGCTGATTGCCATGTTGTGATTGATTTGAGTGTTGTGTGCAATGGTGGTGAATTGACTCCAAATTCTGCTGGAGAGTGCTCCAATGTTGCAGCCTGTTTGGAACCTCAGAAGCGTAAGGCTGTTCCTGTTCCTCGTGGTGAGAGAGCTTCAATCAGCAAGAAGAAGGGTCTTGGCAGGCCTATGAAAATTGAGAAGATCTAG 1464 0.4167 MAAVTGVFDAVKNIYRGKETWRLKVRVVRMWVICAKENPSNVFSVEMVLVDAEGGRFQASIRKAMLKKFMGNVVKGAVYKMSFFGVIDNLGTYRATTHDYKLLFQPRTKVYPCENFMVVLTAVSEEKQYEKFNRTIRVLELELTDDKGVVRCSLFGHFIDLMKDYLKNRSIDELDIVVIQFARLKSYMGKNYLHSLSNSTRVLWNPQIEEAISFRNGIAFHGFDLHASIQMIGENDRPYSLREEFINHFPRKGIEDLQLMEEDGLFICLASVGGIVKNDMWWYNACKCHKAVTYDDDTNTYYCVGCEVNVSDVTPRFRLRLDVNDITERAEFVIFDHNASFLLSKTSDFDVLIGKELLFKVEVKEDRAFKWDDSFKVKKLCSDEAIIKEFKEESPIKIPEKSTFKTTLTELPGEKLSAEGAADCHVVIDLSVVCNGGELTPNSAGECSNVAACLEPQKRKAVPVPRGERASISKKKGLGRPMKIEKI 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi912g00003 487 Gene3D - 9 114 IPR012340 -
Sebi912g00003 487 Gene3D - 115 222 IPR012340 -
Sebi912g00003 487 Pfam Replication factor-A C terminal domain 275 347 IPR013955 -
Sebi912g00003 487 Gene3D - 247 383 IPR012340 -
Sebi912g00003 487 SUPERFAMILY Nucleic acid-binding proteins 251 378 IPR012340 -
Sebi912g00003 487 SUPERFAMILY Nucleic acid-binding proteins 9 117 IPR012340 -
Sebi912g00003 487 CDD RPA1_DBD_C 254 366 IPR047192 -
Sebi912g00003 487 MobiDBLite consensus disorder prediction 464 487 - -
Sebi912g00003 487 SUPERFAMILY Nucleic acid-binding proteins 115 223 IPR012340 -
Sebi912g00003 487 PANTHER OS03G0429900 PROTEIN 12 370 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi912g00003 487 Pfam Domain of unknown function DUF223 46 115 IPR003871 -
Sebi912g00003 487 Coils Coil 122 142 - -
Sebi912g00003 487 CDD RPA1_DBD_A_like 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi912g00003 Sebi-Chr912 113441 115893 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi912g00003 13 348 Core DNA Replication Machinery Family AT5G08020 23.622 5.12e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi912g00003 - - lja:Lj6g3v0884310.1 335.88