Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi90g00072 ATGGATCAAGGGAGGATCATCAACCCAAGAAGTGGCTTCTGTGCCTCCAATTCAATCTTCTACAGCAAGCGTAAGCCACTCCCTCTCCCTCCAAACCACTCCTTAGACGTCACCACCTTCATCTCCTCCCGCGCCCACCATGGCAAGACCGCCTTCGTCGACGCCGCCACCGGCCAACTCTTCACCTACCAACAGCTCTGGACAGCCGTCAACGCCGTCGCCACCTCCCTCTCGGAAATGGGAATCCGAAAGGGAAACGTCGTCCTCCTCCTCTCTCCCAACTCCATCTACTTCCCCGTCGTCTGCCTCGCCGTCATGTCCCTCGGCGCCATAATCACCACCACCAACCCTCTCAACACCACGCGCGAAATCGCCAAACAGATCGCCGATTCCAAACCCGTCCTCGCCTTCACAATCCCTCCACTCGTTCCCAAAATCATCGGCGCATCACCTTCCCTCCCAATCATTCTCATGGACAGCGAATCAGCCACAGTCTCAGTCTCAGGGGCTAAAATTGTAGCGACATTGAATGAGATGATGAAGAAGGAACCGAAAACGAGTCAAGTGAGGGACCGAATTAACCAGGATGACACTGCCACGTTGCTGTATTCCTCTGGCACGACGGGACCTAGCAAAGGCGTGATCTCTTCCCATGGGAACTTGATAGCGATGGTTCAAATCGTTTTGAATCGGTTCAGTAAAGAAGAGGAGCAGCAAACCTTCATCTGCACTGTGCCAATGTTCCATATATATGGTCTCGCAGTGTTTGCAACGGGGCTTCTGGCTTCAGGATCAACCGTTGTGGTTCTGTCCAAATTTGAGATGCATGACATGTTGTTATCGATTGAGAAGTTCCGTGCGTCGTATCTGCCGCTGGTGCCGCCTATACTGGTGGCGTTGCTGAACAACGCGGATGCGATTAAGGGGAAGTATGACTTGAGGTCCTTGCATACAGTGCTTTCTGGTGGAGCTCCGTTAAGCAAGGAGGTGATAGAAGGGTTTGTGGAGAAGTACCCAAATGTTACCATTATGCAGGGTTATGGCTTGACGGAATCAGGTGGAGTTGGGGCATCGACTGACTCATTGGAGGAGAGTCGGAGGTACGGTACGGCGGGGCTTTTGTCTCCTTCCGCTGAGGCTATGATTGTTGACCCTGAGACTGCTCAACCACTTCCGGCTAACCGCGCCGGTGAGCTATGGCTCCGAGGTCCCACCATCATGAAAGGTTATTTCAGTAACGAGGAAGCAACCACATCAACCCTTAATTCAGAGGGATGGTTAAGAACAGGGGATGTTTGCTACTTTGATGATGATGGATTCTTATTTATTGTTGATCGGTTGAAAGAGCTCATTAAGTACAAGGGATATCAGGTTCCACCAGCAGAACTAGAGGCTTTGCTGCTGACTCATCCTGCTATTTCAGATGCTGCTGTCATACCGTATCCGGATAAGGAGGCTGGGCAGGTTCCAATGGCATATGTTGTAAGGAAGGCTGGAGATAGCATATCAGAAAAACAAGTTATGGATTTTATTGCAGGACAGGTGGCTCCTTACAAAAGAATTCGAAAAGTGGCTTTCATATCTTCCATTCCCAAAAATCCATCTGGTAAAATTCTTAGGAAGGATCTCATCAAGCTTGCAACATCTAAACTTTGA 1656 0.5012 MDQGRIINPRSGFCASNSIFYSKRKPLPLPPNHSLDVTTFISSRAHHGKTAFVDAATGQLFTYQQLWTAVNAVATSLSEMGIRKGNVVLLLSPNSIYFPVVCLAVMSLGAIITTTNPLNTTREIAKQIADSKPVLAFTIPPLVPKIIGASPSLPIILMDSESATVSVSGAKIVATLNEMMKKEPKTSQVRDRINQDDTATLLYSSGTTGPSKGVISSHGNLIAMVQIVLNRFSKEEEQQTFICTVPMFHIYGLAVFATGLLASGSTVVVLSKFEMHDMLLSIEKFRASYLPLVPPILVALLNNADAIKGKYDLRSLHTVLSGGAPLSKEVIEGFVEKYPNVTIMQGYGLTESGGVGASTDSLEESRRYGTAGLLSPSAEAMIVDPETAQPLPANRAGELWLRGPTIMKGYFSNEEATTSTLNSEGWLRTGDVCYFDDDGFLFIVDRLKELIKYKGYQVPPAELEALLLTHPAISDAAVIPYPDKEAGQVPMAYVVRKAGDSISEKQVMDFIAGQVAPYKRIRKVAFISSIPKNPSGKILRKDLIKLATSKL 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi90g00072 551 CDD 4CL 29 543 - -
Sebi90g00072 551 Gene3D - 17 448 IPR042099 -
Sebi90g00072 551 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 13 545 - -
Sebi90g00072 551 FunFam 4-coumarate--CoA ligase 2 449 550 - -
Sebi90g00072 551 Gene3D - 449 550 IPR045851 -
Sebi90g00072 551 ProSitePatterns Putative AMP-binding domain signature. 201 212 IPR020845 -
Sebi90g00072 551 Pfam AMP-binding enzyme 44 453 IPR000873 -
Sebi90g00072 551 Pfam AMP-binding enzyme C-terminal domain 462 537 IPR025110 -
Sebi90g00072 551 SUPERFAMILY Acetyl-CoA synthetase-like 43 548 - -
Sebi90g00072 551 FunFam Long-chain-fatty-acid--CoA ligase FadD 21 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi90g00072 Sebi-Chr90 2022340 2025450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi90g00072 6 551 Monolignol Biosynthesis Gene Families AT1G20500 66.179 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi90g00072 K10526 - gmx:100811344 887.871