Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi90g00056 ATGGCGGATCAATGCTCTAATGAAGGCTCCAGCAGTAGCAATATTTCTGCAGAGTGTTCAGATTCAACAGTTCAGCTCAATATCAAAACTCTAGATTCCCGCATCTACAGTTTTCAAGTGGACAAAAATGTGACCTATAATCTCCATTCCTGTCATTCTCGTATGCCCATTTCATCATTCAAAGAGAAAATTGCAAATGAAACCGGTGTTCCAGTTAGTCAGCAACGACTGATTTTCAGAGGAAAAGTCTTAAAGGATGAGCATGTTCTTTCTGAGTACCATGTTGAGAATGGGCATACGTTGCATTTAGTTGAAAGACAACCAAATCAGTCACAGTCTTCTGGCGCGAGATCTAGCGAGCCAACTGGAACAAATAGTAACAGAGGAAATGATGTAGGCTCAGGGGCTCCTCGTAACCGTGTTGGGCAAATTTCACACAGTGTTGTTCTTGGGACTTTTAATGTGGGGGAACAAGGTGAAGGCATTGTTCAAGACCTCACCCGGGTTATTGGGGCAGTTTTGAATTCTATTGCAAATGGTGGCCAGAACACAATTAGTGTTCCTAATGCTACACAAACTCCAGCTCCACCAGGGAATGAAACTGAAGGAGTGCATGCTGGAAATCAGGTACCATCTGGACAGACATTTCCTGGTCAGGCATTCCAATCTCTGCCTCAAGTTGCTCAGATTCCTATTGCTGCAGGAGCAATACCCATTCCTTCTATCAATGCACCAATTCCTCATTCATTGAACACGCTGTCTGAGTTTATAAATCGCATGGAGCAGACACTATCACACAATGGTTATTTGCCAAATCTGTCTTCAACTGACCCTGGAGATCGACGAGTGGAATTGCCTTCCAATACACAGGGGTTGCCGACAATTGAAGCATTAACCACTGTATTGCATCGTGCAGAACAGTTGCTTGGTGGTCAAGCTGTTGCTGCGCTATCTCATATTGCAGGACGCTTGGAGCGAGAGGGAACTTCTGCTGATCTTGGTGTAAGGGGTCAAATACTGTCAGAATCAGTGCAGATAGGACTTGCTATGCAACATTTAGGTGCTCTTCTGCTTGAACTTGGCCGAACAATGTTGACACTGCGTATGGGACAGTCTACTGCAGAATCTGTTGTTAATGCTGGACCAGCAGTTTATATTTCTCAATCAGGGCCAAATCCTATAATGGTGCAGATCACGGTTCACTGGGGGTGGGTAATTGTGTGTGCTCACGTTGGTGCAAGTTCATCATTGAAGTCTGCAGCATATATGATGATCACTTTACTGAACCTTCCCTTCCCACTTCAGACAAGCTCTCTCTTTGGTGGTCCTGTTCCTTCTCCAACTCCTGCACCTTTAGGTGCCATTGGTATTGGAAGTGCTCCTAGGAACGTAAACATTCACATACATGCTGGTACCTCTCTCACACCAATTGTTTCAGCAATTGGTTCTAGGCCAAATAATGGGGAAGGAACAAGAAGTGAAAACCGTAATGAGCCTGGCTTAGGTGATTCAGGTTCAACACGAGTATTACCTGTTAGAAATGTCATATCAGCAACTCTCCCATCGAACCCTCCTGGTGTTGGAGTTGCTAGTAGCACACAAACTGGATTTGGTACTTCTACTTCTCAGCCACCACCGGATTCAGTTCCAATTTCATCTATTGTAGCTGAAATCAATTCTCGCCTTAGAAACTCCATTGGTAATATGCAAGGAGAGAACACAGTTCTGTCAGGTGGATTTGGTACTTCTACTTTGCAGCCACCACCAGATTCAGCTCCATTTTCATCTATTGTAGCTGAAATCAATTCTCGCCTTAGAAACTCTATTGGTAATATGCAAGGAGATAACACAGTTCTGTCAGGCCAAATGGAATCAACTAGCAGGGGATTGTCTTCTGGATCTGAATCAAGACCTGCACTGGGAAATGAACAGCAGGATACTGGGACTGCCACTCCATCTTCTATTGGTTGCACTTCTGAAAGTGGAGTAGAGAAGCCCCACACCGAGGCAATCCAAACCTGTAGTAATGACGAGAGAGATGTTTTGGTCGACAAATTTGTTTCAAGTTCTTCCAATCAAGGTTTACAAAGTTGTTCCAGTGGAGAAACAACGGTAAAATCAGAAAAAGTACTGGATGCTCCATCTGTAAGTGAAAGACGAGATGTAACTGAACCTGCCAAAGCTGCTCCACTAGGTTTGGGTATGAGTGGTTTGGAGCGTAAGAGGCGAAGTAGACTTCAACCTCCTGTAGGTAAAAGTGCCGATGATGGATCATCCAGTTCTTCCATCAATCAAAGTCAGCAAACAAGAACAGATGGTCAACATATATTACAAACTCTCGCGAGTCATGGATCTGCTGTGAATTTGAGAAATGCTAATAGGCCATCCCAGCGGCCCTTGCCCTCCAGTGATAGCCAGATTGATGTGGGTGGTTTAATGTCTCAAGTTTTACATAGCCCCGCTTTGAATGGTTTGTTGGAAGGGGTTTCACAGCAAACAGGAGTTGACTCACCTGATGGCTTGAGGAACATGTTGCAACAATTCACTCAGAGCCCACAGATGATGAATACGGTCAATCAGATTGTCCAACAGGTTGGCGGTCAGGATATGGGGAGTATGTTCACTGGAATGGAAGGAGGGCAGGGTGGTGGTATTGATTTTTCAAGGATGTTTCAACAGATGATGCCTATTGTATCTCAAGCCCTTGGTGGGGGAAATCCTCCCTCACTATTCCCTGCTGTAGGACCAGAAGCCCGTGCACGCAGAGATGGAACAATTACCAGAGATGAAAGTTCTAATAATCGAAGTTTACAGCTTGACCTTCAACCAGTGGCAGAGAGGATTGATCGCCTTAGTCCACCGACAGATGTTTTCCGTGCTGTAGCTGAAAATGCTGTGCAGCTATCTGGCAGTGGAAATGCTTCTAATGATCTTTTGGATGAGTTATGCAGGAATGAGAGTCTTGCCAGTGAATATGTGGAGATGTTGCGATATGATGTAAGTCAGATGCTTGAGGAACACTCTGAGCCGGACAAGTCCTAA 3042 0.4477 MADQCSNEGSSSSNISAECSDSTVQLNIKTLDSRIYSFQVDKNVTYNLHSCHSRMPISSFKEKIANETGVPVSQQRLIFRGKVLKDEHVLSEYHVENGHTLHLVERQPNQSQSSGARSSEPTGTNSNRGNDVGSGAPRNRVGQISHSVVLGTFNVGEQGEGIVQDLTRVIGAVLNSIANGGQNTISVPNATQTPAPPGNETEGVHAGNQVPSGQTFPGQAFQSLPQVAQIPIAAGAIPIPSINAPIPHSLNTLSEFINRMEQTLSHNGYLPNLSSTDPGDRRVELPSNTQGLPTIEALTTVLHRAEQLLGGQAVAALSHIAGRLEREGTSADLGVRGQILSESVQIGLAMQHLGALLLELGRTMLTLRMGQSTAESVVNAGPAVYISQSGPNPIMVQITVHWGWVIVCAHVGASSSLKSAAYMMITLLNLPFPLQTSSLFGGPVPSPTPAPLGAIGIGSAPRNVNIHIHAGTSLTPIVSAIGSRPNNGEGTRSENRNEPGLGDSGSTRVLPVRNVISATLPSNPPGVGVASSTQTGFGTSTSQPPPDSVPISSIVAEINSRLRNSIGNMQGENTVLSGGFGTSTLQPPPDSAPFSSIVAEINSRLRNSIGNMQGDNTVLSGQMESTSRGLSSGSESRPALGNEQQDTGTATPSSIGCTSESGVEKPHTEAIQTCSNDERDVLVDKFVSSSSNQGLQSCSSGETTVKSEKVLDAPSVSERRDVTEPAKAAPLGLGMSGLERKRRSRLQPPVGKSADDGSSSSSINQSQQTRTDGQHILQTLASHGSAVNLRNANRPSQRPLPSSDSQIDVGGLMSQVLHSPALNGLLEGVSQQTGVDSPDGLRNMLQQFTQSPQMMNTVNQIVQQVGGQDMGSMFTGMEGGQGGGIDFSRMFQQMMPIVSQALGGGNPPSLFPAVGPEARARRDGTITRDESSNNRSLQLDLQPVAERIDRLSPPTDVFRAVAENAVQLSGSGNASNDLLDELCRNESLASEYVEMLRYDVSQMLEEHSEPDKS 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi90g00056 1013 MobiDBLite consensus disorder prediction 753 772 - -
Sebi90g00056 1013 MobiDBLite consensus disorder prediction 688 706 - -
Sebi90g00056 1013 MobiDBLite consensus disorder prediction 103 133 - -
Sebi90g00056 1013 CDD Ubl_ubiquitin_like 26 104 - -
Sebi90g00056 1013 Pfam Ubiquitin family 51 107 IPR000626 GO:0005515
Sebi90g00056 1013 MobiDBLite consensus disorder prediction 785 808 - -
Sebi90g00056 1013 MobiDBLite consensus disorder prediction 688 772 - -
Sebi90g00056 1013 SUPERFAMILY Ubiquitin-like 11 123 IPR029071 -
Sebi90g00056 1013 Gene3D - 12 119 - -
Sebi90g00056 1013 PRINTS Ubiquitin signature 87 108 IPR019956 -
Sebi90g00056 1013 PRINTS Ubiquitin signature 66 86 IPR019956 -
Sebi90g00056 1013 MobiDBLite consensus disorder prediction 610 670 - -
Sebi90g00056 1013 MobiDBLite consensus disorder prediction 478 502 - -
Sebi90g00056 1013 MobiDBLite consensus disorder prediction 478 549 - -
Sebi90g00056 1013 FunFam Large proline-rich protein BAG6 16 120 - -
Sebi90g00056 1013 MobiDBLite consensus disorder prediction 185 205 - -
Sebi90g00056 1013 MobiDBLite consensus disorder prediction 610 676 - -
Sebi90g00056 1013 MobiDBLite consensus disorder prediction 102 139 - -
Sebi90g00056 1013 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 9 1012 - -
Sebi90g00056 1013 SMART ubq_7 24 106 IPR000626 GO:0005515
Sebi90g00056 1013 ProSiteProfiles Ubiquitin domain profile. 24 110 IPR000626 GO:0005515
Sebi90g00056 1013 MobiDBLite consensus disorder prediction 510 549 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi90g00056 Sebi-Chr90 1651747 1661529 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi90g00056 24 106 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 36.145 9.56e-10 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi90g00056 - - gmx:100783611 1300.03