Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi90g00005 ATGGAAGAAGTGGAGCTAGCTTCTGATTCTCATTTAGAACAAGGCCTAGCAACATCTAAAATGGACCAACACTCTAAACAAACCAAAACGGAGAGTGTTTCATTTTTTGGCTTGTTTTCTGCTGCTGATACAACTGACTATATCTTAATGTTCCTCGGAAGCGTTGGTGCTTGTGTCCATGGTGCAGCTCTTCCTGTTTTCTTTATTTTGTTCGGCCGTATGATTGATTCTTTGGGACATCTTTCTAAACACCCTCACAAATTGTCATCACGAATTTCTGAGCATGCTTTGTACTTGGTCTATCTTGGAGCCATTGTTCTGGTATCGGCTTGGATGGGTGTTGCATTCTGGATGCAAACAGGGGAGAGGCAAACGGCTCGTTTGCGTTTAAAATATTTGCAGTCAGTGTTAAAGAAAGATATTAATTTCTTTGACAATGAAGCCAGGGATGCAAATATCATTTTCCACATCTCCAGTGATGCAATATTGGTACAAGATGCAATCGGTGACAAGACAGGCCATGCCATGCGTTACCTTTCTCAATTCATTGTTGGATTTGCTATTGGATTTACATCAGTGTGGCAGCTTACACTACTCACCTTGGCTGTTGTTCCATTGATAGCTATAGCAGGGGGAGCTTATACAATAATTATGTCTACTTTATCAGAAAAGGGTGAAGCAGCTTATGCTGAAGCTGGGAAGGTTGCTGAAGAGGTAATTTCTCAAGTGCGTACTGTTTACTCATTTGTAGGAGAAGAGAAAGCAGTTCGTTCCTACTCTAAGTCACTTGATAATGCTCTAAAGCTGGGAAAGAAGAGTGGTTTTGCAAAAGGGATTGGAGTAGGCTTTACATATGGGTTGTTATTTTGTGCTTGGGCATTGCTTCTTTGGTATGCTAGCATACTTGTGAGGCATCATAAGACAAATGGAGGGAAAGCTTTCACAACAATTATCAATGTCATCTTTAGTGGATTTGCACTTGGTCAAGCTGCTCCAAACCTTGCTTCCATTGCTAAAGGGCGTGCAGCTGCAGCCAATATCATGAACATGATTGCATCTGTCTCAGACACTTCAAAAAAGTTGGATGATGGCACTGTTTTGCCACAAGTAGCAGGGAAAATTGAGTTTTGTGATGTCTGCTTTGCTTACCCTTCAAGATCCAATATGGTCTTTGAAAATTTGAGCTTCACAGTGAGTGCTGGGAAGACTGTAGCAATTGTTGGTCCTAGTGGTTCCGGAAAGAGCACTATCATTTCCATTATTCAACGGTTCTATGACCCTACTTCAGGTAAGATCCTGTTGGATGGATATGACTTACAGAATCTTCAATTGAAATGGTTGAGAGAACAGATGGGTTTGGTTAGTCAAGAACCAGCACTATTTGCCACAACAATAGCTGGAAACATTTTATTTGGAAAAGAAGATGCCAACATGGATCAAATCATACAAGCCTCCAAGGCTGCAAATGCTCATTCTTTCATTACAGGATTACCTGATGGTTATCATACTCAGGTTGGAGAGGGTGGCACCCAACTTTCAGGGGGACAAAAGCAAAGAATTGCTATAGCAAGAGCTGTGCTCAGAAACCCAAAAATATTGCTTTTAGATGAGGCCACTAGTGCTCTTGATGCTGAATCAGAACTCAATGTTCAACAGGCATTGGAAAAAATAATGTCAAACCGGACAACAATAATTGTTGCACATCGGTTATCCACCATAAGAGATGTAGACACAATTGTCGTGTTAAAGAATGGCCAGGTTGTTGAAAGTGGGACTCATTTGGAATTGATGTCCAAAAATGGTGAGTATGTGAATCTAGTGAGTTTGCAGTCATCACAAAATCTAACAAACTCTAGCTCAATATCTCGCTCTGGAAGCTCAAAAGATTCTAGTTTTAGAGAACCTTCAGACAATCTGAACCATGAGGAGGAGTTGAAGTCTATGACAACAAGAGAACTTCAATCAAGTGATCAAGGCTTGCCATCAAATACTGCTTCCACTCCATCAATTTTGGATTTACTAAAACTGAATGCCCCAGAGTGGCCCTATGCAATACTTGGGTCAATAGGTGCAGTGATGGCTGGCATGGAAGCTCCTCTCTTTGCCCTTGGAATCACCCATATTTTGACTGCATTTTACTCTCCTCATGGTTCTAAAATCAAGGAAGAAGTTGATAGGGTAGCTCTTATATTTGTTGGAGTGGCTGTTGTTACTATACCTATTTATCTATTGCAACACTACTTTTATACATTGATGGGAGAGCGTCTCACTGCTCGTGTGCGTTTATTAATGTTCTCAGCTATTCTTACCAATGAAATTGCATGGTTTGATTTGGATGAGAACAACACTGGCTCACTAACAGCCATGCTAGCTGCAGATGCAACATTAGTAAGAAGTGCTCTAGCTGACAGACTCTCAACCATTGTGCAAAATGTAGCTCTCACTGTAACAGCATTTGTTATTGCTTTCACATTGAGTTGGAAATTAACATCAGTGGTTGTAGCCTGCCTTCCCCTTCTCATAGGAGCTTCTATCACAGAGCAACTATTTCTCAAGGGGTTTGGAGGAGATTACAGCCATGCTTACTCTAGAGCAACTTCTTTGGCTCGTGAAGCTATTGCCAACATACGTACTGTTGCTGCTTTTGGTGCAGAAGATCGAATCTCAATCCAATTTGCCTCTGAATTGAACAAACCTAACAAGCAGGCACTCTTACGAGGCCATATATCAGGTTTTGGCTATGGTGTGACACAACTGTTTGCTTTCTGTTCCTATGCACTTGGTCTTTGGTATGCATCCATTTTAATCAAGAAGAAAGAGTCAAATTTTGGAGACCTCATGAAGTCCTTCATGGTCTTAATCATCACTGCTCTGGCAATAGCAGAAACACTAGCTCTTACCCCTGACATTGTGAAGGGGTCACAAGCGTTGGGCTCAGTTTTCAGCATTCTCCAAAGAAGAACAGCCATCAACCCTGACAACCCCAACTCAAAGATGATAACTGATGTCAAAGGAGAGATAATGTTTAAAAATGTGTGCTTCAAGTACCCAATGAGACCTGATATTACCATATTTCAGAACCTAAACCTCAAAGTCTCAGCAGGAAAGAGTCTGGCAGTAGTAGGTCAAAGTGGTTCAGGGAAGAGCACTGTGATTGCTCTTGTAATGAGATTTTATGACCCCACTTCAGGGTCAGTTCTGATAGATGAATGTGACATCAAAAGCCTAAACTTGAGATCCTTAAGGCTTAGAATAGGATTGGTTCAGCAAGAACCTGCTTTGTTCTCTACCACAATTTATGAAAACATCAAGTATGGAAAAGAGGAGGCATCAGAAATAGAGGTAATGAAGGCTGCAAAAGCAGCAAATGCTCATGAGTTCATCAGTAGAATGCCAGAAGGGTACAGGACTGAGGTTGGTGAGAGGGGAGTGCAGTTATCAGGAGGACAAAAGCAGAGGGTGGCAATAGCTAGAGCTATTCTGAAAGATCCATCTATTCTTCTGTTGGATGAAGCAACAAGTGCATTGGACACAGTTTCAGAAAGGTTGGTCCAAGAGGCTCTTGATAAGCTTATGGAAGGCAGAACAACAATTTTGGTAGCTCACAGGCTCTCAACTGTTCGTGATGCAGACAGCATTGCAGTGCTGCAACATGGAAAGGTTGCTGAAATGGGTAGCCATGAAAGGCTGATGGCAAAACCTGGAAGCATTTATAAGCAATTGGTTAGTCTACAGCAAGAAAAGCGTGACCAAGAAGACCATTAA 3765 0.4159 MEEVELASDSHLEQGLATSKMDQHSKQTKTESVSFFGLFSAADTTDYILMFLGSVGACVHGAALPVFFILFGRMIDSLGHLSKHPHKLSSRISEHALYLVYLGAIVLVSAWMGVAFWMQTGERQTARLRLKYLQSVLKKDINFFDNEARDANIIFHISSDAILVQDAIGDKTGHAMRYLSQFIVGFAIGFTSVWQLTLLTLAVVPLIAIAGGAYTIIMSTLSEKGEAAYAEAGKVAEEVISQVRTVYSFVGEEKAVRSYSKSLDNALKLGKKSGFAKGIGVGFTYGLLFCAWALLLWYASILVRHHKTNGGKAFTTIINVIFSGFALGQAAPNLASIAKGRAAAANIMNMIASVSDTSKKLDDGTVLPQVAGKIEFCDVCFAYPSRSNMVFENLSFTVSAGKTVAIVGPSGSGKSTIISIIQRFYDPTSGKILLDGYDLQNLQLKWLREQMGLVSQEPALFATTIAGNILFGKEDANMDQIIQASKAANAHSFITGLPDGYHTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELNVQQALEKIMSNRTTIIVAHRLSTIRDVDTIVVLKNGQVVESGTHLELMSKNGEYVNLVSLQSSQNLTNSSSISRSGSSKDSSFREPSDNLNHEEELKSMTTRELQSSDQGLPSNTASTPSILDLLKLNAPEWPYAILGSIGAVMAGMEAPLFALGITHILTAFYSPHGSKIKEEVDRVALIFVGVAVVTIPIYLLQHYFYTLMGERLTARVRLLMFSAILTNEIAWFDLDENNTGSLTAMLAADATLVRSALADRLSTIVQNVALTVTAFVIAFTLSWKLTSVVVACLPLLIGASITEQLFLKGFGGDYSHAYSRATSLAREAIANIRTVAAFGAEDRISIQFASELNKPNKQALLRGHISGFGYGVTQLFAFCSYALGLWYASILIKKKESNFGDLMKSFMVLIITALAIAETLALTPDIVKGSQALGSVFSILQRRTAINPDNPNSKMITDVKGEIMFKNVCFKYPMRPDITIFQNLNLKVSAGKSLAVVGQSGSGKSTVIALVMRFYDPTSGSVLIDECDIKSLNLRSLRLRIGLVQQEPALFSTTIYENIKYGKEEASEIEVMKAAKAANAHEFISRMPEGYRTEVGERGVQLSGGQKQRVAIARAILKDPSILLLDEATSALDTVSERLVQEALDKLMEGRTTILVAHRLSTVRDADSIAVLQHGKVAEMGSHERLMAKPGSIYKQLVSLQQEKRDQEDH 1254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi90g00005 1254 MobiDBLite consensus disorder prediction 616 664 - -
Sebi90g00005 1254 Gene3D ABC transporter type 1, transmembrane domain 37 976 IPR036640 GO:0005524|GO:0016020
Sebi90g00005 1254 ProSitePatterns ABC transporters family signature. 512 526 IPR017871 GO:0005524|GO:0016887
Sebi90g00005 1254 ProSitePatterns ABC transporters family signature. 1146 1160 IPR017871 GO:0005524|GO:0016887
Sebi90g00005 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 51 339 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi90g00005 1254 MobiDBLite consensus disorder prediction 634 650 - -
Sebi90g00005 1254 CDD ABC_6TM_Pgp_ABCB1_D2_like 674 990 - -
Sebi90g00005 1254 FunFam ABC transporter B family member 4 364 617 - -
Sebi90g00005 1254 SUPERFAMILY ABC transporter transmembrane region 43 347 IPR036640 GO:0005524|GO:0016020
Sebi90g00005 1254 PANTHER ABC TRANSPORTER B FAMILY 17 737 IPR039421 -
Sebi90g00005 1254 FunFam ABC transporter B family member 4 997 1252 - -
Sebi90g00005 1254 Pfam ABC transporter 392 540 IPR003439 GO:0005524
Sebi90g00005 1254 Pfam ABC transporter 1026 1174 IPR003439 GO:0005524
Sebi90g00005 1254 Gene3D - 997 1254 IPR027417 -
Sebi90g00005 1254 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 685 972 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi90g00005 1254 CDD ABC_MTABC3_MDL1_MDL2 374 610 - -
Sebi90g00005 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1007 1243 IPR003439 GO:0005524
Sebi90g00005 1254 Gene3D - 364 611 IPR027417 -
Sebi90g00005 1254 CDD ABC_MTABC3_MDL1_MDL2 1007 1245 - -
Sebi90g00005 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 610 IPR027417 -
Sebi90g00005 1254 SUPERFAMILY ABC transporter transmembrane region 673 985 IPR036640 GO:0005524|GO:0016020
Sebi90g00005 1254 SMART AAA_5 1034 1222 IPR003593 GO:0016887
Sebi90g00005 1254 SMART AAA_5 400 586 IPR003593 GO:0016887
Sebi90g00005 1254 MobiDBLite consensus disorder prediction 616 633 - -
Sebi90g00005 1254 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 374 609 IPR003439 GO:0005524
Sebi90g00005 1254 Pfam ABC transporter transmembrane region 51 323 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi90g00005 1254 Pfam ABC transporter transmembrane region 686 958 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi90g00005 1254 CDD ABC_6TM_Pgp_ABCB1_D1_like 50 347 - -
Sebi90g00005 1254 MobiDBLite consensus disorder prediction 1 25 - -
Sebi90g00005 1254 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 996 1245 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi90g00005 Sebi-Chr90 254026 259334 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi90g00005 23 1246 Calmodulin-binding Proteins AT2G36910 49.239 0.0 1216