Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi908g00013 ATGGTGTACCTTTTGGTCCATACAAGTGAAGCAAAGCTGAAAGACTGGCAGAGAACTAAAATTGAAATGATACAAAAAGCTCATAAGGAATCTGAGGTGAAAGGATCTCGTGGGGATCCACAAATATGTTCCGGAGGGAGTTCGCCTGATTCATCACTTAATACAAAAAATATTGAACTGGATTTGGAATCAAACCAAAATGATTCGATTATGGATCAAGGGTTTGAAATTTATTCTAATGCTGAAGGGAATGTGGCCAAGTGTGAACTTCCATTTAGACAAAATGGAGATGTCTCTGAGAAAACACATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGACATTCCAAAGGTGACTGAATATTTGAAAATGCATTGGAAGGAATTAGGGAAGTCAGATGATATAGTAAATGAATTTGTTACATGGCCTCTTTATGATGGAGCTATTTTTCTTGACAGACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCGTGGTCATTTGAACAGAATTTAGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTCCAAGCAAGGAATGTTCAGTCCACTGTTCAGTTGGGCCTTGATTTCTTATCTCCAGAAAGCCTGGGGGAGGCTGTAAGATTAGCAGGGGAAGTCCGCTGTCTACCTAATGAACATGAAGCTAAGCTTCAAGTATTGGAGGTCGGGAAGATATCTCTTTATGCAGCAAGTTCAGCCATCAAAGAAGTTCAGAAACTTGTACTTGACCCAAAGGTTTTGGAATTGGTCAGTTTCCCTGTTGGGTCCCCTGCAAAGTCAACCAACCTTGACAGAAATATTATACTTGGTGCAGAGATCGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAATTATGAGAAGATGGTTAAGCGGAGGCAGATTACCTGTGCTTGA 939 0.4111 MVYLLVHTSEAKLKDWQRTKIEMIQKAHKESEVKGSRGDPQICSGGSSPDSSLNTKNIELDLESNQNDSIMDQGFEIYSNAEGNVAKCELPFRQNGDVSEKTHPGVLWDVFRRQDIPKVTEYLKMHWKELGKSDDIVNEFVTWPLYDGAIFLDRHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAGEVRCLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKVLELVSFPVGSPAKSTNLDRNIILGAEIGYGDPNLTAMVSENYEKMVKRRQITCA 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi908g00013 312 MobiDBLite consensus disorder prediction 27 53 - -
Sebi908g00013 312 Pfam JmjC domain, hydroxylase 106 198 IPR003347 -
Sebi908g00013 312 Gene3D Cupin 1 228 - -
Sebi908g00013 312 ProSiteProfiles JmjC domain profile. 1 219 IPR003347 -
Sebi908g00013 312 SMART cupin_9 2 219 IPR003347 -
Sebi908g00013 312 SUPERFAMILY Clavaminate synthase-like 107 225 - -
Sebi908g00013 312 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 2 253 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi908g00013 Sebi-Chr908 106310 109685 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sebi908g00013 JmjC 3.2e-07 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi908g00013 K15601 - gmx:100801287 496.893