Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi908g00012 ATGGATCAGGCTCGATCGACCAACGGCGAGGAGAATGTGGGGATTCCAGACGATTTGCGTTGCAAGAGATCAGATGGGAAGCAATGGAGATGCACGGCCATGTCCATGCCCGACAAAACGGTGTGCGAGAAGCACTACATCCAAGCCAAGAAGAGAGCAGCAAATTCCGCCATGAGGGCTAACCTCAAGAAAGCTAAGAGGAAATCGTTGCCACTGGGCGAGTCTGATATTTATTTGGAGAGCAAAAGTGATGATTTTGACACGCCCCTTTGTGCTGCTATCAACAACAACCACTCTTCTTCCTCTGGGAAGAAGTTCTTGGATAAGGTTTCCAAGAACCAGTTTCGTTATACCCCTGAGTCTGAGACTAGAAGGGGTTCTTCAACTCGTCATGCTCCCAGGCCTAGTGATGATTCCCCTGAACGTGTGGATGTGGATGTCCCTCCCTATGAAGAGAATTTGGTCTCCTACGATTCGCCCCCAGCTTCTGGAGTGGATTCAGCAAGGAAAAGGTCGCACAGGAGCTTGGATGCTAATGCCACGACTGAATATTCCGATGGAACCTCGGATTCTTCTCAAGACACTGGTGGCCAGACTTGCCATCAGTGCCGGAGGAATGACAGGGACAGAGTTACTTGGTGCCTTCGGTGTGATAGGAGAGGATACTGTGATAGCTGTATATCAACATGGTACTCAGACATTTCGTTGGATGAAATTCAGAGGATATGTCCTGCATGCCGTGTCAGTAAAATTTCTGGTTTTGCTGAGATTAAGGTTCGGATACGAGAGATACCTGTACTAGATAAGTTACAGTATCTTCACTTGCTGCTCTCGTCAGTGCTTCCTGTGGTAAAGCAGATCCACCGGGAACAGTGCTTTGAAGTTGAACTTGAAAAGAAGTTGCGCGGTGTTGAAATAGATCTCCCGAGGACAAAATTAAATGCAGATGAGCAGATGTGCTGGTACACCTATAACACTTTTCTTAGAATTGGTGATCTGATACCCATTACTGATTATCATCGACGCTGTCCAAGTTGCTCATATGATTTGTGCATTAATTGTTGTCGAGACCTTCGAGAAGCAACTGTACATCACAATAAAGAACCCCAAACAGAGCAAGCAAAAACTTCTGATCAAAACATATTATTTAAGTTTCCTCATTGGAGATCCAATGACAACGGAAGTATTCCATGCCCCCCTAAGGAGTATGGTGGCTGTGGTTACTCACCATTAAATTTAAGTAGGATTTTCAAAATGAATTGGGTTGCAAAATTGGTGAAAAATGTAGAGGAAATGGTTGGTGGCTGCAGAATTAGTAATGCTGATGGTCCACCAGAAACTGGGTTGAATGCCCTCAGCCTTTGCCAATATTCTCATAGAGAGGATAGTGATGATAATTATCTTTATTGTCCAACATCTGAAGATCTCAAAACAGATGGGATTGGCAATTTTAGAAAGCACTGGAAAAATGGTGAACCCATTATCGTTAAGCAAGTATTTGATAGGTCATCCATGTCAAGTTGGGATCCAATGGTCATATGGCGAGGGATTCGAGAGACATCAGATGAGAAAATGAAAGAAGAAAACAGAATGGTTAAGGCCATAGATTGCTTAGATGGATCCGAGATTGATATTGAGCTTGGACAGTTCATGAAAGGATACTCTGAAGGACATATTCATGAAAATGGTTGGCCACAAATATTGAAGTTGAAGGATTGGCCTTCACCTAGTGCATCTGAAGAATTTCTATTGTACCAAAGACCTGAATTTATCAGCAAAGTGCCTTTACTTCAGTATATTCACTCCAAGTGGGGCCTTCTTAATGTTGCAGCTAAATTGCCTCATTACTCCTTGCAAAATGATGTAGGGCCCAAGATCTATATATCTTATGGGATTAGTGATGAACTTGGTAGAGGAGATTCAGTGACTAATCTCCACTTCAATATGCGTGATATGGTGTACCTTTTGGTCCATACAAGTGAAGCAAAGCTGAAAGACTGGCAGAGAACTAAAATTGAAATGATACAAAAAGCTCATAAGGAATCTGAGGTGAAAGGATCTCGTGGGGATCCACAAATATGTTCCGGAGGGAGTTCGCCTGATTCATCACTTAATACAAAAAATATTGAACTGGATTTGGAATCAAACCAAAATGATTCGATTATGGATCAAGGGTTTGAAATTTATTCTAATGCTGAAGGGAATGTGGCCAAGTGTGAACTTCCATTTAGACAAAATGGAGATGTCTCTGAGAAAACACATCCTGGAGTTCTTTGGGATGTCTTTCGTCGGCAGGACATTCCAAAGGTGACTGAATATTTGAAAATGCATTGGAAGGAATTAGGGAAGTCAGATGATATAGTAAATGAATTTGTTACATGGCCTCTTTATGATGGAGCTATTTTTCTTGACAGACACCATAAAAGAAAGTTGAAGGAAGAATTTGGAGTGGAGCCGTGGTCATTTGAACAGAATTTAGGGGAAGCTATATTTGTTCCTGCTGGTTGCCCTTTCCAAGCAAGGAATGTTCAGTCCACTGTTCAGTTGGGCCTTGATTTCTTATCTCCAGAAAGCCTGGGGGAGGCTGTAAGATTAGCAGGGGAAGTCCGCTGTCTACCTAATGAACATGAAGCTAAGCTTCAAGTATTGGAGGTCGGGAAGATATCTCTTTATGCAGCAAGTTCAGCCATCAAAGAAGTTCAGAAACTTGTACTTGACCCAAAGGTTTTGGAATTGGTCAGTTTCCCTGTTGGGTCCCCTGCAAAGTCAACCAACCTTGACAGAAATATTATACTTGGTGCAGAGATCGGATATGGAGACCCTAATTTGACTGCAATGGTTTCTGAGAATTATGAGAAGATGGTTAAGCGGAGGCAGATTACCTGTGCTTGA 2892 0.426 MDQARSTNGEENVGIPDDLRCKRSDGKQWRCTAMSMPDKTVCEKHYIQAKKRAANSAMRANLKKAKRKSLPLGESDIYLESKSDDFDTPLCAAINNNHSSSSGKKFLDKVSKNQFRYTPESETRRGSSTRHAPRPSDDSPERVDVDVPPYEENLVSYDSPPASGVDSARKRSHRSLDANATTEYSDGTSDSSQDTGGQTCHQCRRNDRDRVTWCLRCDRRGYCDSCISTWYSDISLDEIQRICPACRVSKISGFAEIKVRIREIPVLDKLQYLHLLLSSVLPVVKQIHREQCFEVELEKKLRGVEIDLPRTKLNADEQMCWYTYNTFLRIGDLIPITDYHRRCPSCSYDLCINCCRDLREATVHHNKEPQTEQAKTSDQNILFKFPHWRSNDNGSIPCPPKEYGGCGYSPLNLSRIFKMNWVAKLVKNVEEMVGGCRISNADGPPETGLNALSLCQYSHREDSDDNYLYCPTSEDLKTDGIGNFRKHWKNGEPIIVKQVFDRSSMSSWDPMVIWRGIRETSDEKMKEENRMVKAIDCLDGSEIDIELGQFMKGYSEGHIHENGWPQILKLKDWPSPSASEEFLLYQRPEFISKVPLLQYIHSKWGLLNVAAKLPHYSLQNDVGPKIYISYGISDELGRGDSVTNLHFNMRDMVYLLVHTSEAKLKDWQRTKIEMIQKAHKESEVKGSRGDPQICSGGSSPDSSLNTKNIELDLESNQNDSIMDQGFEIYSNAEGNVAKCELPFRQNGDVSEKTHPGVLWDVFRRQDIPKVTEYLKMHWKELGKSDDIVNEFVTWPLYDGAIFLDRHHKRKLKEEFGVEPWSFEQNLGEAIFVPAGCPFQARNVQSTVQLGLDFLSPESLGEAVRLAGEVRCLPNEHEAKLQVLEVGKISLYAASSAIKEVQKLVLDPKVLELVSFPVGSPAKSTNLDRNIILGAEIGYGDPNLTAMVSENYEKMVKRRQITCA 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi908g00012 963 ProSiteProfiles JmjC domain profile. 602 870 IPR003347 -
Sebi908g00012 963 MobiDBLite consensus disorder prediction 123 148 - -
Sebi908g00012 963 SUPERFAMILY Clavaminate synthase-like 485 875 - -
Sebi908g00012 963 MobiDBLite consensus disorder prediction 178 200 - -
Sebi908g00012 963 ProSiteProfiles WRC domain profile. 15 59 IPR014977 -
Sebi908g00012 963 MobiDBLite consensus disorder prediction 114 202 - -
Sebi908g00012 963 SMART cupin_9 583 870 IPR003347 -
Sebi908g00012 963 Pfam WRC 16 56 IPR014977 -
Sebi908g00012 963 Pfam JmjC domain, hydroxylase 757 849 IPR003347 -
Sebi908g00012 963 ProSiteProfiles Zinc finger RING-type profile. 200 247 IPR001841 -
Sebi908g00012 963 MobiDBLite consensus disorder prediction 678 703 - -
Sebi908g00012 963 Gene3D Cupin 465 879 - -
Sebi908g00012 963 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 17 904 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi908g00012 Sebi-Chr908 91861 97888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi908g00012 16 56 GRF Transcription Factor Family AT3G13960 46.341 2.63e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sebi908g00012 JmjC 1.9e-06 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi908g00012 K15601 - gmx:100792166 1512.66