Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi908g00005 ATGTCAGATGATTCAGATGATGTTTCCAATATCTCTGATGCTAGTAGAAGTTCTGATACAGACAGTAATTCTTCTTATGATGTGGATGACAATCAAGATGACTATGGCGATAAAGATATAAATATAATCCACTCAGGCAATACAGCCCATTTTATAAAGGCAAAAGAATTGTCAATTGAATTACTGGAAAATGACGATGGTGTCTCTCAAAGTAGGGATAACTCTGATGCTACCTGTGGTGAATTTTGCGTACAACCTCCTCCCAAGGAGCTTTTGGATCAAGGACCAACAATCATATATGTAACCACCAGAAAAGAAACACTGAGAATTGCAAAGTATTTATGCAAGTTTGGTGTGAAAGCTGCTGCTTATAATGCAGGGCTGCCCAAGTTGCATCTAAGAAGTGTTCATAAAGAGTTTCATGAAAATAGTATACAGGTTGTTGTTGCGACAGTAGCATTTGGAATGGGGATTGACAAATCAAATGTCAGAAGAATCATCCACTATGGTTGGCCACAGAGTTTGGAAGCCTACTACCAAGAAGCTGGACGGGCTGGTCGAGATGGGAAGTTAGCAGATTGCTTTCTATATGCAAACCTAGCAAGAAAGCCAAGACTTTTGCCAAATCGTAGAAGTGAAGATCTAATAAAACAAGCATATGTCATGTTGTCTGATGGTTTCAGATGTGATGTGTGCATTAAAGGACCACCTCAAAGGCAAAATTTAAAAGAAGAGGCTTGTATTTTACTACAAACTATAGGTGTCCACAATGCTTGTAGCTATTCAATGGATTCCTTATATAATGATGATATTCATTTTGACTCCAAAGATATAAGACAAGGAGAGAGGCCAAGTCTTAAGATTTTAGTTAGGAATATAAGGGAACAGTTTAAAAAGTTTCTAACCACTGATATATTATGGTGGAGTGGTCTTGCTCGAATATTGGAAGTTAAAGGATACATCAGGGAAGGAGATGACAAGACACATGTTCAGATAAAATATCCAGAGACAGCAGAATTGGGATTGGAATTTCTGAAGTCTATGAGTGAGCAAGCTTTCTATGTTTACCCTGAGGCAGATATGTTGCTTGCAAGGAAAACTCACAAACACAAACCATATTCCTCATTCTCAGAATGGGGAAAAGGTTGGGCTGATCCTGAGATACGTCGCCAGCGCCTGGAAAGAATACAGCTCAATAGAAATCCAATGATGCTGCCGAGTCCCAGAAAGAAACCAAAGAGGAAAGCTAGAAAAGAGCAACCTGATCTAAGGACTTCTCGGGGTAGACTGGCAGCAAAGCTCTCAAAATATAAGTGA 1317 0.3918 MSDDSDDVSNISDASRSSDTDSNSSYDVDDNQDDYGDKDINIIHSGNTAHFIKAKELSIELLENDDGVSQSRDNSDATCGEFCVQPPPKELLDQGPTIIYVTTRKETLRIAKYLCKFGVKAAAYNAGLPKLHLRSVHKEFHENSIQVVVATVAFGMGIDKSNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCFLYANLARKPRLLPNRRSEDLIKQAYVMLSDGFRCDVCIKGPPQRQNLKEEACILLQTIGVHNACSYSMDSLYNDDIHFDSKDIRQGERPSLKILVRNIREQFKKFLTTDILWWSGLARILEVKGYIREGDDKTHVQIKYPETAELGLEFLKSMSEQAFYVYPEADMLLARKTHKHKPYSSFSEWGKGWADPEIRRQRLERIQLNRNPMMLPSPRKKPKRKARKEQPDLRTSRGRLAAKLSKYK 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi908g00005 438 SMART helicmild6 108 189 IPR001650 -
Sebi908g00005 438 MobiDBLite consensus disorder prediction 398 438 - -
Sebi908g00005 438 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 234 IPR027417 -
Sebi908g00005 438 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 87 227 IPR001650 -
Sebi908g00005 438 Pfam Helicase conserved C-terminal domain 92 188 IPR001650 -
Sebi908g00005 438 Gene3D - 72 246 IPR027417 -
Sebi908g00005 438 MobiDBLite consensus disorder prediction 1 39 - -
Sebi908g00005 438 MobiDBLite consensus disorder prediction 7 25 - -
Sebi908g00005 438 PANTHER DNA HELICASE RECQ FAMILY MEMBER 86 270 - -
Sebi908g00005 438 FunFam ATP-dependent DNA helicase 72 198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi908g00005 Sebi-Chr908 47881 52114 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi908g00005 92 189 Eukaryotic Initiation Factors Gene Family AT5G11170 29.592 6.65e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi908g00005 K10900 - gmx:100793222 607.831