Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi905g00011 ATGGCTAGTGCTGATGAATTACCCCTGGAAGAGACCCAAGTTGCAATGGAAGAAGTGAAGGAAGAAACACATGGAGATGAAGGGAAAGAACAGAGCCAAATACGGGTGATTAAGAATCCTAATGACATTAATAAGAGGAAGATTTTTGTTGGTGGCTTATCATCTGGCACATCCGAGGAGGAGTTTAAGAAGTATTTTGAGAAGTTTGGCACAATCATTGATGCGGTTGTGATGCAAGATACTGTAACACACCGACCAAGAGGTTTTGGGTTCATCACTTTTGATTCGGAAAAATCTGTTGAAGATATTTTGGTGAATAACTTTCATGACTTCAACGGTAAGCAAGTTGAAGTCAAAAGGGTTGTGCCAAAAGAGGATCAGAACCGTGAATGTGTTGTTTGTTTGGAAAAATCAAGATCCAATAAGAATTACAATATTCTCCCTAGTCGTGCTCCTCTTCCTTATTATAACAACAATGAACCATATGCCCACGGAAGTACAAACACCTACGGTGGTTGGTACCTCATGAATGGATTTAGAGGAAATGGATATGCAGTTCCATATAATCCTTATAATTATGGGAGCATTATGTATGTACCCATGGTGACCATGGGTCAGGCAAATCAAGCTTATTTTTTGCCAAGTCTTGCTTATGCTGCTAGTAATGTTGGGCAATAA 678 0.3953 MASADELPLEETQVAMEEVKEETHGDEGKEQSQIRVIKNPNDINKRKIFVGGLSSGTSEEEFKKYFEKFGTIIDAVVMQDTVTHRPRGFGFITFDSEKSVEDILVNNFHDFNGKQVEVKRVVPKEDQNRECVVCLEKSRSNKNYNILPSRAPLPYYNNNEPYAHGSTNTYGGWYLMNGFRGNGYAVPYNPYNYGSIMYVPMVTMGQANQAYFLPSLAYAASNVGQ 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi905g00011 225 CDD RRM2_Hrp1p 47 124 - -
Sebi905g00011 225 MobiDBLite consensus disorder prediction 13 32 - -
Sebi905g00011 225 SUPERFAMILY RNA-binding domain, RBD 39 128 IPR035979 GO:0003676
Sebi905g00011 225 Gene3D - 43 132 IPR012677 -
Sebi905g00011 225 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 33 198 - -
Sebi905g00011 225 MobiDBLite consensus disorder prediction 1 32 - -
Sebi905g00011 225 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 48 116 IPR000504 GO:0003723
Sebi905g00011 225 SMART rrm1_1 47 119 IPR000504 GO:0003723
Sebi905g00011 225 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 46 123 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi905g00011 Sebi-Chr905 257380 258261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi905g00011 17 161 Eukaryotic Initiation Factors Gene Family AT2G36660 29.605 3.62e-09 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi905g00011 K14411 - gmx:100786665 171.4