Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi904g00018 ATGGGGGATCACTTTAATTTGCTGGTTGATCGATTGATTACTGAATCTACATTAGAAGCTGCAATTGAAAGCAGAAAGAGGTCAATGCAGGCTGCATCCTCAGCAGTGAATGATACAGAAGTTAACCCCTCTTTGATGAAGGTGGGTGTGGATGATATCAAATGTCCAGGGAAACTGGTAGAATGCAGGATATGTCATGATGATGATGAAGATTCCAATATGGAGACACCCTGCTCCTGTTGTGGCAGTTTGAAGTATGCCCACCGTAAATGTATACAACGATGGTGTAATGAGAAAGGTGACACCACCTGTGAGATATGCCACCAGATTGATTTGCAATTCAAGCCTGGTTATACAGCTCCTCCTCCACTATTTCAGTTTGGACGTATTCCAATGAGTTTCAGGGGAAACTGGGAGATTTCAAGAAGAGACCTAAATAGTACTCATTTGGTTAGCATGGTTCCCACCGACCAGAACCTTACCAATTCTAACTATGATCAATATTCAGCCTCTACTTCAGGAAGTTTCATATGCTGTCGTTCAGTTGCTATCATTTTCATGGTTCTACTGATTCTAAGACATGCACTTCCCCTTGTAATCAGTGGAAATAAGGAGGTTTCTTTCCCCCTTTTTATGCTGTTATTATTTCGGATTGCTGGAATCGTTCTTCCTATATACTTCGTGGTTAGAGCAGTGATGCTTATCCAGCGACATCGGAGACAACACCGGGAGCATCCTAATGCCTTGGTCAATTTATCTGATGATGAAAACGAACAAGCAGCTTTGCAGCCTCCTCCTCATGTGATACATTTACTGTAG 819 0.4225 MGDHFNLLVDRLITESTLEAAIESRKRSMQAASSAVNDTEVNPSLMKVGVDDIKCPGKLVECRICHDDDEDSNMETPCSCCGSLKYAHRKCIQRWCNEKGDTTCEICHQIDLQFKPGYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVPTDQNLTNSNYDQYSASTSGSFICCRSVAIIFMVLLILRHALPLVISGNKEVSFPLFMLLLFRIAGIVLPIYFVVRAVMLIQRHRRQHREHPNALVNLSDDENEQAALQPPPHVIHLL 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi904g00018 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 116 IPR013083 -
Sebi904g00018 272 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 1 242 IPR033275 -
Sebi904g00018 272 CDD RING_CH-C4HC3_MARCH 62 108 - -
Sebi904g00018 272 Pfam RING-variant domain 62 107 IPR011016 GO:0008270
Sebi904g00018 272 Pfam Protein of unknown function (DUF3675) 116 232 IPR022143 -
Sebi904g00018 272 FunFam Zinc finger family protein 50 120 - -
Sebi904g00018 272 ProSiteProfiles Zinc finger RING-CH-type profile. 54 114 IPR011016 GO:0008270
Sebi904g00018 272 SMART ringv_2 61 108 IPR011016 GO:0008270
Sebi904g00018 272 SUPERFAMILY RING/U-box 60 109 - -
Sebi904g00018 272 ProSiteProfiles Zinc finger RING-type profile. 62 108 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi904g00018 Sebi-Chr904 158313 160677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi904g00018 61 110 C3H Transcription Factor Family AT2G37950 47.170 3.98e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi904g00018 - - vun:114190540 473.781