Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi903g00011 ATGCCAAGTGTCATTCTTTCTACTACAACAGAAGCATCTAACTTCATGTTCACCGTTATTAAATCAGAGATGTGGCAGCCAAAACGACACCTTCTTACAACAGGCTGGAGTATATTTGTTAGTGCCAAGAGACTTGTAGCTGGAGATTCTGTGCTTTTCATATGGAATGAGAAGAATCAGCTTCTTTTGGGAATACGTCGAGCCAACCGACCACAAACTGTAATGCCATCATCAGTTCTATCCAGTGATAGTATGCACATTGGACTTCTTGCAGCTGCTGCCCATGCTGCAGCAATAATAGCTGTTTTACAGGCTAGTCCATCTGAGTTTGTCATACCACTTTCAAAATATATCAAAGCTGTGTACCATACACGTATTTCTGTTGGTATGCGTTTCAGAATGCTTTTTGAGACTGAAGAGTCAAGTGTCCGCAGATACATGGGTACAATAACGGGCATAAGTGATCTGGATACTGTTCGGTGGCCGAATTCTCATTGGCGCTCTGTCAAGGTTGGGTGGGATGAATCAACAGCAGGAGAGAGACAGCCACGGGTGTCATTATGGGAAATTGAGCCTTTAACAACATTCCCAATGTATCCATCATTATTTCCCCTCAGATTGAAACGTCCATGGCATCCTGGCACCTCATCTATGCATGATGGCAGAGATGAAACAACTAATGGACTAATGTGGCTGAGAGGTGGACCTGTAGACCAAGGTCTTAATTCCCTAAATTTTCAAGGTGCTGGTATGTTGCCCTGGATGCAGCAGAGACTGGATCCAACCTTACTAGGAAATGATCAGAATCAACAGTACCAAGCCATGTTGGCAGCTGGTTTGCCGAACCTAGGTAGTGGATATCTCATGAGGCCACAAATGATGAATTTTCAACAGCCTTTCCATTATCTTCAACAATCTGGAAACAATAATTCTCCTTTGCAACTTCAGCAGCAGCAAGCAATTCAACAATCAGTGTCTTCTAATATGCTGCAGCCACAAGCCCAAGTACTGACAGAGAACCTGTCTCATCACCTACTTCAGAAATCACATAACAATCAAGAAGTCCAACCACAACAGCAGCAACATACTTATCAAGATACACTTCTAATTCAAAGTGAACAGCCCCATCAGAGACAACACACCAGTGTGCCTTCACCATCATATTCCAAACAAGATTTCTTGGATTCAAGCATAAAGTTCCCCGCTTCAGTTTCCCCCGAACAAAACATGCTTAGTTCACTTTGTCATGAAGGAAGTGGCAGTCTCTTGAATTTATCCAGAAGCGGTCAGTCCTTGCTGGCTGAACAGTTACCCCAACAGCCATGGACTGCAAAGTATGCTCCTGAGCAGGTCAATACCTTCAGCAGCGCAGTGTCACATGCACAATATTCTGGAAAAGATTCTGCTGTGGTGCCACCACATTGTAATTCAGATGCCCAAAATTCTACTCTATTTGGTGTCAATATTGATTCATCTGGCCTTCTACTCCTACCACTGTTCCTGGTTACACCACTTCATCAGCTGATACTGATCCATCAACATGCCATTAGGGGAGTCTGGGTTCCAGAGTTCTTATATGCTTGCATGCAAGATTCATCAGAGTTGTTGCAGAGTGCAGGGCAAGTTGACCCTCAAAACCAGACTCGAACATTTGTCAAGGTTTACAAATCAGGGTCAGTTGGGCGCTCACTTGACATCTCCAGGTTCAGCAGCTATCATGAGCTGCGAGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAGTTACAAACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAATGACGTTCTTCTCCTGGAGACGATCCGTGGGATTGTTTGTTGACATTTCCTTTGTGTGTATTTTCTGCATGACCTCTTGTAGATCATTCGTGAATAATGTTTGGTATATCAAAATACTTTCACCTGAAGATATTCAGAAAATGGGAGAACAAGCGGTAGAATCGCTTGCTCAAAGTTCAGGACAAAGGCTAAATGGCACTGCTGTGGAGTCTCACCACATTGTCTCTGGACCACCATCAATTGGCTCCCTTGAATACTAA 2076 0.4398 MPSVILSTTTEASNFMFTVIKSEMWQPKRHLLTTGWSIFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLLAAAAHAAAIIAVLQASPSEFVIPLSKYIKAVYHTRISVGMRFRMLFETEESSVRRYMGTITGISDLDTVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSMHDGRDETTNGLMWLRGGPVDQGLNSLNFQGAGMLPWMQQRLDPTLLGNDQNQQYQAMLAAGLPNLGSGYLMRPQMMNFQQPFHYLQQSGNNNSPLQLQQQQAIQQSVSSNMLQPQAQVLTENLSHHLLQKSHNNQEVQPQQQQHTYQDTLLIQSEQPHQRQHTSVPSPSYSKQDFLDSSIKFPASVSPEQNMLSSLCHEGSGSLLNLSRSGQSLLAEQLPQQPWTAKYAPEQVNTFSSAVSHAQYSGKDSAVVPPHCNSDAQNSTLFGVNIDSSGLLLLPLFLVTPLHQLILIHQHAIRGVWVPEFLYACMQDSSELLQSAGQVDPQNQTRTFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLQTLLDQAGSLYSSTGRMTFFSWRRSVGLFVDISFVCIFCMTSCRSFVNNVWYIKILSPEDIQKMGEQAVESLAQSSGQRLNGTAVESHHIVSGPPSIGSLEY 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi903g00011 691 ProSiteProfiles PB1 domain profile. 549 649 IPR000270 GO:0005515
Sebi903g00011 691 Gene3D - 5 68 IPR015300 -
Sebi903g00011 691 Pfam B3 DNA binding domain 26 68 IPR003340 GO:0003677
Sebi903g00011 691 Gene3D - 545 654 - -
Sebi903g00011 691 ProSiteProfiles B3 DNA-binding domain profile. 1 69 IPR003340 GO:0003677
Sebi903g00011 691 SUPERFAMILY DNA-binding pseudobarrel domain 26 96 IPR015300 -
Sebi903g00011 691 Pfam Auxin response factor 104 170 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Sebi903g00011 691 Gene3D - 125 197 - -
Sebi903g00011 691 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 26 654 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sebi903g00011 691 FunFam Auxin response factor 125 197 - -
Sebi903g00011 691 MobiDBLite consensus disorder prediction 303 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi903g00011 Sebi-Chr903 212031 225951 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi903g00011 26 657 B3 DNA Binding Superfamily AT5G37020 56.449 0.0 611
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sebi903g00011 Auxin_resp 8.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi903g00011 - - gmx:100814479 979.548