Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi902g00001 ATGGGGAGAGGAAGGGTGCAATTGAAGAGGATCGAGAACAAGATCAATAGGCAAGTGACCTTCTCTAAGAGGAGGTCTGGTTTGCTCAAGAAAGCACATGAGATCTCTGTGCTTTGTGATGCTGAAGTCGCTCTTATAGTTTTCTCCAACAAAGGCAAGCTCTTTGACTTCTCCAGCGATCCCTGTATGGAAAGAATTCTTGAACGGTATGAGAGATATTCATACGCGGAGAGGCAGCTTGTTGCAAATGATATTCAGCCACAAAATGAAAATTGGACTCTAGAACACGCAAAGCTCAAAGCAAGATTGGAAGTTCTACAGAGAAACCAAAGGAACTTTATGGGAGAAGAACTTGATGGCCTAAGTATCAAAGAGCTTCAGAATTTGGAACATCAACTTGATTCTGCTCTCAAACACATCAGATCACGAAAGAACCAACTCATGTATGAATCCATTTCAGAGCTTAATAAAAAGGATAAAGCCCTTCAAGAACAAAACAACTTGCTTGCTAAAAAGATAAAAGAGAAAGAGAAGGCACTAGCTCAACAGGCACAAATGGAGCAACAAAATGATGATATGGATCTAGCCTCCTCTATCCTTATAGCTCAACCAATGGAGACCCTAAATATTAGAGGCTCCTCACAAGGCAGAGGTGATGGAGGAGACAATGAAGGAACCTCAACTCAACCTCAAGTTAACGCCCTTCTCCCACCTTGGATGCTTCGTCCAATAAATGAATAA 741 0.417 MGRGRVQLKRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSNKGKLFDFSSDPCMERILERYERYSYAERQLVANDIQPQNENWTLEHAKLKARLEVLQRNQRNFMGEELDGLSIKELQNLEHQLDSALKHIRSRKNQLMYESISELNKKDKALQEQNNLLAKKIKEKEKALAQQAQMEQQNDDMDLASSILIAQPMETLNIRGSSQGRGDGGDNEGTSTQPQVNALLPPWMLRPINE 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi902g00001 246 SUPERFAMILY SRF-like 2 89 IPR036879 GO:0003677|GO:0046983
Sebi902g00001 246 Coils Coil 89 109 - -
Sebi902g00001 246 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi902g00001 246 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Sebi902g00001 246 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Sebi902g00001 246 MobiDBLite consensus disorder prediction 210 246 - -
Sebi902g00001 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sebi902g00001 246 MobiDBLite consensus disorder prediction 210 234 - -
Sebi902g00001 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sebi902g00001 246 Gene3D - 13 85 IPR036879 GO:0003677|GO:0046983
Sebi902g00001 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sebi902g00001 246 Coils Coil 152 190 - -
Sebi902g00001 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sebi902g00001 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi902g00001 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi902g00001 246 ProSiteProfiles K-box domain profile. 89 179 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi902g00001 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 178 - -
Sebi902g00001 246 Coils Coil 126 146 - -
Sebi902g00001 246 Pfam K-box region 86 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi902g00001 Sebi-Chr902 39730 48862 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi902g00001 1 194 MADS-box Gene Family AT1G26310 66.327 5.64e-91 267
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sebi902g00001 K-box 6e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi902g00001 K09264 - gmx:100816836 375.555