Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi901g00009 ATGAAGTCTTCACTGCCGGAACAAGCGTTTCTGGTTTGTTTCACGGTGTGGGTTTTCGCCATTGTCGCCGGCGCCGATCTAGCTTCCGACAGGGCGAGCCTTCTGGCTCTCCGAAGCGCCGTCGGAGGGCGAACCCTCCTCTGGAACATGACGGAGACTTCCCCGTGTTCGTGGACCGGCGTTCTCTGCGATAAGGGAAGGGTTACAGTGTTACGGTTACCGGGGATGGGTCTCTCCGGCAAGCTTCCGACGGGTTTAGGGAACCTGACCGAACTGCAGACACTTTCTCTACGGTTCAACGCTCTAACCGGACCTATTCCATCTGATTCGCAAACCTCCAGGCTCTTCGGAATCTCTATCTTCACGGCAACTTCTTCTCCGGTGAAGTCCCTGATTTTCTGTTCAGTTTGCAGAACTTGTTCACACGTGTCGTTTAACCAGTTAAACGGGTCAATTCCTGAGAGGTTTTCGCGTTTGGAAGAAAGCGCGTTTGTTGGGAATTCCCTTTGTGGGAAGCCCCTTCAACTTTGCCCTGGCTCTGGGAAGAGCAGCAACAAGTTATCTGGGGGAGCTATTGCTGGGATTGTGATTGGTTCTTTGTTTGGTGTGTTGTTGATTCTGCTTCTTTTGTTTTTCTTGTGTAGAAAAAGAAAGGAAAGTGATGATGTGGCACCTAGCAAACGTGTTGAGGCTGAAGTGCAAGCTGAAGTGTTGGGAAAAGGGACCTTTGGAACCACTTACAAGGCCACATTGGAGATGGGAAGCAGTGTGGCTGTGAAGAGGTTGAAGGATGTTACTGCAACTGAGAGGGAATTCAGGGAGAAAATTGAGGAAGTGGGGAAGTTGGCTCATGAGAATTTGGTCCCACTTAGGGGTTATTATTTTAACAGGGATGAAAAGCTTATTGTGTATGATTACATGCCTATGGGGAAGCTTATCTGCACTCTTACATGGGTCCAACAGCCTCCCATGGAAATATCAAGTCATCAAATATCCTTCTCACCCAAATCTTATGAAGCTCGTGTCTCTGACTTTGGCCTTGCATATCTTGCCCTCCCAACCTCCACTCCCAACCGCCTTCTCACAGGGAAGGCTCCAACTCATTCTTCACTGAATGAAGAAGGGGTAGACCTACCAAGATGGGTCCAATCTGTGGTTCAAGAGGAGTGGGACACTGATGTTTTTGACATGGAGCTTCTCAGGTACCAAAATGTTGAGGAGGAAATGGTCAACCTCTTGCAGCTTGCACTTGAATGCACTGCTCAATACCCTGATAAGAGACCTTCAATGGATTGTGGTTGCAAACAGGATTGA 1314 0.4878 MKSSLPEQAFLVCFTVWVFAIVAGADLASDRASLLALRSAVGGRTLLWNMTETSPCSWTGVLCDKGRVTVLRLPGMGLSGKLPTGLGNLTELQTLSLRFNALTGPIPSDSQTSRLFGISIFTATSSPVKSLIFCSVCRTCSHVSFNQLNGSIPERFSRLEESAFVGNSLCGKPLQLCPGSGKSSNKLSGGAIAGIVIGSLFGVLLILLLLFFLCRKRKESDDVAPSKRVEAEVQAEVLGKGTFGTTYKATLEMGSSVAVKRLKDVTATEREFREKIEEVGKLAHENLVPLRGYYFNRDEKLIVYDYMPMGKLICTLTWVQQPPMEISSHQISFSPKSYEARVSDFGLAYLALPTSTPNRLLTGKAPTHSSLNEEGVDLPRWVQSVVQEEWDTDVFDMELLRYQNVEEEMVNLLQLALECTAQYPDKRPSMDCGCKQD 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi901g00009 437 Gene3D Transferase(Phosphotransferase) domain 1 356 436 - -
Sebi901g00009 437 Gene3D Ribonuclease Inhibitor 30 170 IPR032675 -
Sebi901g00009 437 Pfam Leucine rich repeat N-terminal domain 28 64 IPR013210 -
Sebi901g00009 437 ProSitePatterns Protein kinases ATP-binding region signature. 238 260 IPR017441 GO:0005524
Sebi901g00009 437 SUPERFAMILY L domain-like 47 172 - -
Sebi901g00009 437 Gene3D Phosphorylase Kinase; domain 1 233 306 - -
Sebi901g00009 437 Pfam Protein tyrosine and serine/threonine kinase 235 323 IPR001245 GO:0004672|GO:0006468
Sebi901g00009 437 SUPERFAMILY Protein kinase-like (PK-like) 236 431 IPR011009 -
Sebi901g00009 437 ProSiteProfiles Protein kinase domain profile. 232 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi901g00009 437 PANTHER OS05G0588300 PROTEIN 12 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi901g00009 Sebi-Chr901 126247 128980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi901g00009 25 430 Receptor kinase-like Gene Family AT3G17840 38.667 7.29e-112 341
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Sebi901g00009 PK_Tyr_Ser-Thr 1.2e-10 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi901g00009 - - gmx:100801582 420.239