Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi900g00003 ATGGCTTCACTTGCAAAGCCCAATGATCCGTATGCCTTGCAAATGGTGTTCATTGACGAAGAGGGTGGGAGGATAGAGGCGACAGTGCCGAAGAACGTTATGATGAAATTTTCCCAGGCTGTGGCTGAGGGGGAGGTTTGTAGGCTCTCCAATTTTGGCCTCACAGGGAATTCGGGGAAGTTTCGGGCAGCACATCACAAATTTAAGCTCGTGTTTAATGGTGGAACCAAGTTGGTACCCTGTCCTTCAATAAACATCCCAGTCTCTGGGTTCTCTTTGCTGAAAACTTCAGACATAAACAAGACTAATGGTTGTTCTGACTTCCTCTTTGATTTTATGGGTGTCCTCACGGCTGTTTCCGAGGAGATCACCATGAAGAAGCAAGGCAGGGAGACAAGGCTGATGCTGCTTCATTTAGTTGACGAAATGGGCTCCATAAGATGTGCAGTGTTCGGTGATATGGTGGACATTGTAGCAGGCTTTCTCACTATCCCAAGAGACGGGTTGCCCGTCATAATCATCCAGTTAGCCAAAGCGAATACATATAAGGGTGGCCAAGTGGGCATTCAAAATGTGATGAATGCAACTAAGTTTTACTGGAACCCTAACTTACCAGAGGCAATTGAGTTTAAGAATGGGCTTGCTGTGCATGAGGTAGAGACTGAACTTGCGATTGGTTCCATTAGCGACAGATCTCGACAGGTCTCCATGAAAGAAGAGTTCCTCACTATTTATCCTAGAAAGTCTCTAGGAAAACTGAGCGTCAGTAGGGAGGATGGTTGTGCCATTGTTCTGGGGGTGACTGATGAAGTCTTGCAGGAAGATCATTGGTGGTACATGGCTTGCACATGCATGAAAGCTTTATCCTTTGATTATGCCTCACCTTACTGTCGTGATTGCCACAAAGTTATGTTTGAAATGAACCCAAGGTTTAAGATAAAGATTCTGGTCATAGATGGTGAGGATTGGGTTTCGTTAATGATGTGGGACTCAAAATGCTATTCCTTAATGAACAAAACTTGCAGAGAAATGCTTTCTGAGATTAAGGGTGACCCAACTGAGAGCTACCCGTCTGATATATTGGATCTAATTGGGCAGGAGTTCCTCTTCCGAGTAGAGAGGAAGGAGGATGCAAAGTTTGGCAGTGAAGAATCATATATTGTCAGAAGGGTGTGTGCTGATCCAAGTGTTATTGAAGAGTTCAAAGGTGTAGTTGATGAAGAGACTCCTTTGAAGAACAAATTTGCACCTGCTTTCTCAAAATTGGGAGGCTGCGAAACAAGTGCATGTATGCTTGAGTTGACATCGCAATGCAACTCTGTTGTTACTAATACGGATGTGAGCCATAATTCATGCACCCCATCCACATATCATGCAGAGGACATTGTTGGTGAGCTTAAAAGACAAGGTGAGGCAATAGTAGATGCTCCTGCTGAGGTGAAAAAAAGAACTAGGCTCAGAAGCATCAAGCTGGAAAGAACTTAG 1485 0.4438 MASLAKPNDPYALQMVFIDEEGGRIEATVPKNVMMKFSQAVAEGEVCRLSNFGLTGNSGKFRAAHHKFKLVFNGGTKLVPCPSINIPVSGFSLLKTSDINKTNGCSDFLFDFMGVLTAVSEEITMKKQGRETRLMLLHLVDEMGSIRCAVFGDMVDIVAGFLTIPRDGLPVIIIQLAKANTYKGGQVGIQNVMNATKFYWNPNLPEAIEFKNGLAVHEVETELAIGSISDRSRQVSMKEEFLTIYPRKSLGKLSVSREDGCAIVLGVTDEVLQEDHWWYMACTCMKALSFDYASPYCRDCHKVMFEMNPRFKIKILVIDGEDWVSLMMWDSKCYSLMNKTCREMLSEIKGDPTESYPSDILDLIGQEFLFRVERKEDAKFGSEESYIVRRVCADPSVIEEFKGVVDEETPLKNKFAPAFSKLGGCETSACMLELTSQCNSVVTNTDVSHNSCTPSTYHAEDIVGELKRQGEAIVDAPAEVKKRTRLRSIKLERT 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi900g00003 494 Gene3D - 4 83 IPR012340 -
Sebi900g00003 494 CDD RPA1_DBD_A_like 8 77 - -
Sebi900g00003 494 SUPERFAMILY Nucleic acid-binding proteins 91 215 IPR012340 -
Sebi900g00003 494 CDD RPA1_DBD_B_like 111 211 - -
Sebi900g00003 494 Gene3D - 84 222 IPR012340 -
Sebi900g00003 494 Gene3D - 227 397 IPR012340 -
Sebi900g00003 494 SUPERFAMILY Nucleic acid-binding proteins 10 84 IPR012340 -
Sebi900g00003 494 Pfam Domain of unknown function DUF223 15 81 IPR003871 -
Sebi900g00003 494 SUPERFAMILY Nucleic acid-binding proteins 254 379 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi900g00003 Sebi-Chr900 51296 53678 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi900g00003 17 325 Core DNA Replication Machinery Family AT2G06510 22.289 1.08e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi900g00003 - - lja:Lj6g3v0884310.1 319.701