Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi8g00110 ATGCTTAACAATGGAGTGTGCAGTCTCCGCACGTGCCTCCGTCTCCCGGAGAGACCACTATTCCGAGCAGTTCCTCTCTCATTCAGTCACCGCCGGCGTTTTCTCGCCACCGCATCCGAAACTAAGAAGAAAGAGAAGGTGATAGTGATTTCTGGACCCACCGGTTCCGGCAAGAGCAGACTCGCATTGGAGCTCGCAAAACGCCTCAACGGCGAAATCGTCAGTGCCGACTCTGTCCAGGTATATCGGGGTCTTGATGTTGGATCTGCGAAGCCTTCCCTAAATGAAAGAAAGGAGGTACGGCATCATCTGGTTGACATATTTCACCCATCTGAAGACTATTCTGTTGGGCAGTTTTTTGGGGATGCAAGGCTAGCTACAAGGTGTATTCTTGACAACAGCCGTGTACCCATAGTTGTTGGGGGCACTGGACTTTATTTAAGATGGTATATATATGGAAAGCCAGATGTGCCTAAAGCCTCTCCAGAGATAACATCTGAAGTATATCAGGAGTTAGCTGAACTACAGAAAGATGAAGACTGGGATACTGCCGTGCAGTTGGTAGTAAAAGCAGGTGATCCAAAGGCCCAAGAGTTAGCGGTGAATGATTGGTACCGATTACGGCGTAGCCTAGAGATCATTAAGTCTAGTGGATCACCTCCTTCTGCTTTTCGGGTACCATATGATTCTTTCAGGGAACAGGATGATTGTAGTGTTGCTGATGGTTCTGAGTCATCTGATATGAACACTTATCATGATGCAATGGAAGAAACCAACTCGTCAGAGTTAGATTACGAGTTTATGTGCTTTTTCCTTTCTACTGATAGACTTCACCTCTATAAATCAATTGATTATCGGTGTGAAGATATGCTACTAGGAAGGGATGGGATTTTGTCAGAGGCTCAATGGCTTCTTGATATGGGTCTTCATCCAAACTCCAATTCTGCAACACGAGCAATTGGTTACAGACAAGCCATGGAGTACTTACTAAGATGCAGACAGCATGGAGGTCAGAGTTCAGTTGGAGAATTTTACAAATTCTTGGCTGAATTTCAAAAAGCATCACGGAATTTTGCAAAAAGACAGTTGACATGGTTTCGCAACGAACATATATACCACTGGCTTGATGCTTCTAAACCACTG 1143 0.4506 MLNNGVCSLRTCLRLPERPLFRAVPLSFSHRRRFLATASETKKKEKVIVISGPTGSGKSRLALELAKRLNGEIVSADSVQVYRGLDVGSAKPSLNERKEVRHHLVDIFHPSEDYSVGQFFGDARLATRCILDNSRVPIVVGGTGLYLRWYIYGKPDVPKASPEITSEVYQELAELQKDEDWDTAVQLVVKAGDPKAQELAVNDWYRLRRSLEIIKSSGSPPSAFRVPYDSFREQDDCSVADGSESSDMNTYHDAMEETNSSELDYEFMCFFLSTDRLHLYKSIDYRCEDMLLGRDGILSEAQWLLDMGLHPNSNSATRAIGYRQAMEYLLRCRQHGGQSSVGEFYKFLAEFQKASRNFAKRQLTWFRNEHIYHWLDASKPL 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi8g00110 381 NCBIfam tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA 47 224 IPR018022 GO:0008033
Sebi8g00110 381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 291 IPR027417 -
Sebi8g00110 381 Hamap tRNA dimethylallyltransferase [miaA]. 47 379 IPR018022 GO:0008033
Sebi8g00110 381 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 177 IPR027417 -
Sebi8g00110 381 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 44 373 IPR039657 -
Sebi8g00110 381 Gene3D - 44 380 IPR027417 -
Sebi8g00110 381 FunFam tRNA dimethylallyltransferase 9 155 226 - -
Sebi8g00110 381 Gene3D - 155 226 - -
Sebi8g00110 381 Pfam IPP transferase 80 369 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi8g00110 Sebi-Chr8 3602412 3609799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi8g00110 50 224 C2H2 Transcription Factor Family AT2G27760 27.869 1.20e-16 79.3