Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi8g00104 ATGTCCACTGCAGTACAGTACTGGCCCACAACTTTGATTACCATAGTTCCATTCCCAAAACCATTTTCTCACTGGTTTCCTCTTCTTCCTCCCCAATACCAGTCACCATTGTTGGAGTCCCTATTAGTACCAGTTGATCCTGCGGTTGGTTTGATCCATTGGAGCACCAGGGTTACTCTGTCTGTGATGAATTGTCTGTCTATTCTTTTCCGGAAAAGGGGATCTGCCTCAGCAACACAATCAACCGAAATTGAAATAGATATTTCAGACATTCAGAATGTCAATCTTTACACTTACAAGGAATTGCAAATTGCTACCGAAGGTTTCAGTCCAGCAAACAAGATAGGGGAGGGAGGTTTTGGATCAGTCTATAAGGGAAAGCTTAGAGATGGTACTCTGGCTGCTATAAAGGTTTTGTCAGCTGAATCAAGACAAGGTGTCCGTGAGTTCTTGACAGAAATCAAGGTTATCTCTAGTGTAGAGCATGAGAATTTAGTTAAGTTGTATGGATGCTGCGTGGAAGGAAACCGCAGGATTTTGGTATATGGCTATCTTGAGAATAACAGTCTAGCACAAACACTTCTTGGTGGAGGCCATAGTAGCATCCAATTCAGTTGGCATGTCCGGCGAAACATCTGCATTGGGGTTGCCCGGGGTCTTGCATTCCTTCATGATGAAGTTCGGCCACATATTATTCATAGGGACATTAAAGCAAGCAATATATTACTTAACAAAGGCCTCCAACCCAAAATTTCAGATTTTGGCCTTGCAAAACTTATTTCACCAGATGCGACTCATATAAGTACACTTGTTGCTGGTACAACTGGCTATCTGGCCCCTGAATATGTGGTACGAAATCAGGTGACAAGAAAATCAGATGTCTATAGTTTTGGAATTCTACTACTGGAAATTGTTAGTGGAAAGTGTAACACAAACAGACGTTTGCCTCTTGAAGAACGGTATCTTCATGCAAGGGCATGGGATTTGTATGAGAGGGGGGAGCTGGAAAGTTTGGTGGATATCTTTCTAGATAGAGACTTCAATGTTGAGGAGGCAATAAGTTTTTGTAAGATTGGTCTTCTTTGCATTCAGGATTCTCTTCAGCTCCGACCTTCTATGTCTACTGTACTTGACATGTTGATAGGCAAAATAGATGTGAATGAGAAGAAGATGACAAAACCTGGCTTAATATTTGAATTTATGGAAGCCAAAGACCAAGGGAAACAGAAAGGTAAGCCTGAAGTGGAAGAAACCTCTTTTTTGACTGGATCGGGGAAGCAAGATGATTCATCTTTATCAGGAACCACGAGTTCTTTTGCTGCCATGACCTTCACTTCAATTTATGACCGAAGCAATTAA 1359 0.4165 MSTAVQYWPTTLITIVPFPKPFSHWFPLLPPQYQSPLLESLLVPVDPAVGLIHWSTRVTLSVMNCLSILFRKRGSASATQSTEIEIDISDIQNVNLYTYKELQIATEGFSPANKIGEGGFGSVYKGKLRDGTLAAIKVLSAESRQGVREFLTEIKVISSVEHENLVKLYGCCVEGNRRILVYGYLENNSLAQTLLGGGHSSIQFSWHVRRNICIGVARGLAFLHDEVRPHIIHRDIKASNILLNKGLQPKISDFGLAKLISPDATHISTLVAGTTGYLAPEYVVRNQVTRKSDVYSFGILLLEIVSGKCNTNRRLPLEERYLHARAWDLYERGELESLVDIFLDRDFNVEEAISFCKIGLLCIQDSLQLRPSMSTVLDMLIGKIDVNEKKMTKPGLIFEFMEAKDQGKQKGKPEVEETSFLTGSGKQDDSSLSGTTSSFAAMTFTSIYDRSN 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi8g00104 452 CDD STKc_IRAK 115 380 - -
Sebi8g00104 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 231 243 IPR008271 GO:0004672|GO:0006468
Sebi8g00104 452 ProSitePatterns Protein kinases ATP-binding region signature. 115 137 IPR017441 GO:0005524
Sebi8g00104 452 Pfam Protein kinase domain 112 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi8g00104 452 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 59 410 - -
Sebi8g00104 452 Gene3D Phosphorylase Kinase; domain 1 78 184 - -
Sebi8g00104 452 ProSiteProfiles Protein kinase domain profile. 109 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi8g00104 452 SUPERFAMILY Protein kinase-like (PK-like) 86 380 IPR011009 -
Sebi8g00104 452 MobiDBLite consensus disorder prediction 420 436 - -
Sebi8g00104 452 FunFam cold-responsive protein kinase 1 79 184 - -
Sebi8g00104 452 SMART serkin_6 109 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi8g00104 452 Gene3D Transferase(Phosphotransferase) domain 1 185 394 - -
Sebi8g00104 452 FunFam Putative LRR receptor-like serine/threonine-protein kinase 185 392 - -
Sebi8g00104 452 MobiDBLite consensus disorder prediction 408 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi8g00104 Sebi-Chr8 3527720 3533063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi8g00104 97 386 Receptor kinase-like Gene Family AT1G53430 56.207 2.42e-101 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi8g00104 Pkinase 4.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi8g00104 - - gmx:100801735 615.92