Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi8g00101 ATGTTAGTCGGCAACAAAATAGAAGATTTATGCAATGATAACTTTGAAGGATCTAATGAAGAAAGACAGATTTTTACAGAGATCTTTTCTGGTACTGACATTTTTCAGTCTAGCCAGAGGTATCTTGTTTCTGGAGTTATCAACTTTGAACATGAATCTACTAAAACCACATTTAAATCATTTGGCTCTAGTAATGATAACTCAGTCGTATTGTGTCCCTTGTCTTCAAGACTTACACTTCCTGAGGAGGAATTTAATGTAATTCCGCATTCCAAAGAGACTGCTCCGGGGTGTATGCCAGACAGTTCCATTTGTGAAGACCAGAATGATGAGGATGTAAATGTCAAGCGTATGAAATTTTCTCTGCATGAACCTCCTTGTAGTATATCTAATTCAGAAAATGTTGAAAGTCCATCAGGACTTTCAAAAGTAGTAGTTTCTAAGCTGTCTCATGCTGCTCCAGACTGTGATAGTGAACAAATTGCATTTCGATTAGTTGAATCATCTAAACATGGTGTGATATCTAGTTGCTATCTGTTGAAGCATAATATGTTACAGAATAAACAAGCTGCTAAGGATGTAGATGTTACAAATTGTAAATCAACTACAGCAGATGGGAATGTTGCTAAAGAGGTGTCTGTAAGTAAAGTGGTTGCTTCTCCTGTTTCCCAGGAAAGCTTTGCAAACAGGCTTGCAGTTACTAGTCCACCAATCGCTGTTGTGAAGAAGTCTGGGTCTCCTTTAAATCCTGAGGAAATGCCAGAAGAGTTTCTATCTTCTAATATGGATATCTCGAATTCGTCCTCAAAGCTAGACAAAGAGGATCCTCGTGCTTTATTGCAGTTTCATATTGTGGAGTTGCTTAGGATGGCAGGGTGGTCTATTGAGAAGCGTCATCGACCTAGCAGGCGTTACATGGAATCAGTTTATAGGACACCAAAGGGAAAGCCTATTCGGGAATTTACAAAAGCATGGAGATTATGTGGTCAGCTTTTATCTGTTCAGAAATGCCATTTAATGAATGGAGATTGTAAGGAATGGACTGATATATGTCAATTCTGGTCTGATCTATCCAGTGCACTGATAAATGTTGAAAAAGCAAAGACACAGTCAGAGCCTGCTGCTATGTTGGCTCATCAATGGTGGCTTTTGGATCCTTTTGTTGTAGTTATATTTGTTGATAGAAAGATTGGTGCACTGAAAAAGGGAGAGGTAGTAAAAGCAACTTGGAGTTTAGTTTCTAATAAGTATAATATGGAATGTGCTCCCATTGATTCAGCTCAGGAGAATAATTCTGGTGCTCATTTTGATAAAAAACATGACCAAGCTTTTCCCTGCAATTCTTCTACAGCCACTGGAACTACACTAACTCCTTCTGTGATTAACTACCCTGCCTGTAATCAGAAATCTGATGGTAACCGGGAAAATAAGCATGTTGTACAACATAATCCCAACAGCATAGGAAATCAATGTGGGAAAATGTCTGTGAACAAAAGCAGTATGGATCTAGTTTCTTTACCTGGTTATGGATTGGATAGCACTGGTACCAAGTCAAGTGCTTCCCCTTTAGATATTCATACAAAAACTGAAAATTCAAACAAGGTACTTGGAGTGTCTAAAGTAAATGCTGTTCATCAAGCTAATTCCAAAAGCTGTGATAAACAGAGATCAGAAAATCATCTGAAAACAAATAAAAGAATCGATGGAGATGTGCCAATGGACATCTCAGAGAAAAATAATGCATATGGGGTAAGCCATGGCATGGTTCATTCTCACGATTCAGAGACTATTCAACAGGCTGAATGTAGTGAGGAAGAAGGCAGGAAAATCTCAATAGCTTCTTTATTCAGAAAAGACAACACATATTCTGCCACTAATGTTGCTTTTAAAAAGAAAATGCGGAGGAAGTGCAAAAGGGTATCTGAAATCAAACCGAGTATGTTATCCAATGGTGACAAGCTGGGCTCAACTGTTACTGACCAGATGCAGTCACTGAATGGTGATTCATGTGACACTCAGTTAGGGTTGGAAGAGGTCCAGGATTACCTAGTTGACAATGCAGGAAAAAAAAGAAACCACAGGAAGTTATCATCTGTCAGTACAATCCAGCAACATATTAGGAAAACAAACTACTCCATAACTGGAACAAAAATGTCCAATGGATGCCAAATTAAAGATGATGATCTATTAGTGTCGGCGATATTCAGGAATAAGGACTTAACTCCAAAGACAATCCGAGGTAATTCTAGAGCTAAATCCTGCAAATCAAGGGGATGGAGAAAGCTTAAAAGCCAAAAGGGCCGTTGCAGGTTGCTACCAAGGAACCCTTGTAATGGAGGGAAGCCCAATAAGGATGGCAAGAGGTATTTTCTTGGGGCAAGGACGCTCTTATCCTGGTTGATTGAGAATGGGGTCATATCTTTAAATGATGTGATTCAATACCGAAACCCTAAAGATAATTCTGTCACTAAGGACGGTAGGGTCACCAAAGATGGCATTATTTGTAAGTGTTGTGGTAAGGTGCTTACACTATCAGAGTTCAAGTTTCATGCTGGGTATACACAGAGTCGCCCCTGCCTGAATCTTTTCATGGAGTCTGGTGAGCCCTTTACATTATGCCTCCTTCAAGCTTGGTCAGCAGAATACAAAGCCAGGAAAAGTCAGAATCAAGCCGTGCCTGTTGATGACAATGATAGAAATGATGACTCCTGTGGGTTGTGTGGTGAGGGGGGTGAGCTGATATGTTGTGATAACTGTCCATCTACTTTTCACCTGGCTTGTTTGTCCACTCAGGAGATCCCTGATGGCAACTGGTACTGCACAAACTGCACTTGTCGGATATGTGGAAATTTGGCCCTTGATAAGGAGGCTTCAGATGTGTATAATTCATTACAATGTTCACAGTGCGAACATAAATATCATGAGAAATGCCTGAGAGAAAGAGATAAACAAGAAGGGGTGGTTTCAGACACTTGGTTTTGTGGTCAGGGTTGTCAGGAGGTATACTCTGGTCTCCAATCTCAGGTGGGATTAGTTAATCAAGTAGCTGATGGCTTCTCATGGATGCTTCTTAGGTGCATCCATGATGACCAAAAGGTTCATTCTGCCCAGCGGTTTGCCCTAAAGGCAGTATGCAATACAAAATTATCCGTTGCCCTTACGATCATGGAGGAATGTTTTTTGTCAATGTTGGATCCAAGAACAGGCATCCACATGATCCCCCAAGTTTTATACAACTGGGGGTCTGATTTTGCGCGTCTGAATTTTCAAGGGTTTTACACTGTGGTATTGGAGAAACAGGATGTGTTAATATCTGTAGCATCTATCAGGGTGCATGGAACTACAGTTGCAGAGATGCCTCTAATTGCAACTTGCAGTCGGTATCGTCGTCAGGGAATGTGCCGACTCCTTGTGAATGCAATTGAAGAGATGTTAATATCTGTCAAGGTAGAAAAGCTTGTGATAGCAGCCATTCCTGATTTGGTGGAGACATGGACTAAGGGCTTTGGATTCGTACCTGTAGATGACATCGAAAAGCAAAGATTGAACAAAATCAACTTGATGGTTTTTCCTGGGACAGTGTTACTTGAAAAACCCTTGTACAGGAAGGAGAAGAGTGAAGGACTGTGTGATCAATCAACTTTAGCAACAGATGAATCAATCAAAGTAAGTATCTGTTCTGAAGGAATGGCCATAGCTGAATCATTGCCACAAGATGCTGGAAACATAACTACCGATGAAGTTGGTGCTAAGTCAGAATATGAACCTGTGGACGGCAAAAATCAACTAGACCAAAGGGCTGGCAGTGAAACCAGCAGAGATGATAATACTCAAGCTGTTTACGCTGCATTGGGAGCCAAAGAATCAACAGAAACAAGTAGCTGTGTCAGAGAAGAGAAGATCAGCCACTTGGTGGTATCTGGTGAATCAGAGGAATCTATTGAAGGAAGCATTCAGGAATTGAGGAAAAGCAACAAAATGCAAATGGCAAGTGAGTTGGTACAGCAATCTAGTGAGAACTGTTGTGCTAACAAAGATGGTACTGAATCAGGTGTAAAAATTATTGAGGGCAAGAATATCAAAACAGATGTTCAGGAAAATGCTTTGCATGGCCATTTTTCAAATATGTCCTGCAAAACATTTTCAAGCAGCAATTTTGACAGGGATTCCAATATTGAATGCTCAGTGATGTATGATGAAACAGCTTTTTTTGGAACACTTGCAAAGTCTGCAAGCTGA 4239 0.4041 MLVGNKIEDLCNDNFEGSNEERQIFTEIFSGTDIFQSSQRYLVSGVINFEHESTKTTFKSFGSSNDNSVVLCPLSSRLTLPEEEFNVIPHSKETAPGCMPDSSICEDQNDEDVNVKRMKFSLHEPPCSISNSENVESPSGLSKVVVSKLSHAAPDCDSEQIAFRLVESSKHGVISSCYLLKHNMLQNKQAAKDVDVTNCKSTTADGNVAKEVSVSKVVASPVSQESFANRLAVTSPPIAVVKKSGSPLNPEEMPEEFLSSNMDISNSSSKLDKEDPRALLQFHIVELLRMAGWSIEKRHRPSRRYMESVYRTPKGKPIREFTKAWRLCGQLLSVQKCHLMNGDCKEWTDICQFWSDLSSALINVEKAKTQSEPAAMLAHQWWLLDPFVVVIFVDRKIGALKKGEVVKATWSLVSNKYNMECAPIDSAQENNSGAHFDKKHDQAFPCNSSTATGTTLTPSVINYPACNQKSDGNRENKHVVQHNPNSIGNQCGKMSVNKSSMDLVSLPGYGLDSTGTKSSASPLDIHTKTENSNKVLGVSKVNAVHQANSKSCDKQRSENHLKTNKRIDGDVPMDISEKNNAYGVSHGMVHSHDSETIQQAECSEEEGRKISIASLFRKDNTYSATNVAFKKKMRRKCKRVSEIKPSMLSNGDKLGSTVTDQMQSLNGDSCDTQLGLEEVQDYLVDNAGKKRNHRKLSSVSTIQQHIRKTNYSITGTKMSNGCQIKDDDLLVSAIFRNKDLTPKTIRGNSRAKSCKSRGWRKLKSQKGRCRLLPRNPCNGGKPNKDGKRYFLGARTLLSWLIENGVISLNDVIQYRNPKDNSVTKDGRVTKDGIICKCCGKVLTLSEFKFHAGYTQSRPCLNLFMESGEPFTLCLLQAWSAEYKARKSQNQAVPVDDNDRNDDSCGLCGEGGELICCDNCPSTFHLACLSTQEIPDGNWYCTNCTCRICGNLALDKEASDVYNSLQCSQCEHKYHEKCLRERDKQEGVVSDTWFCGQGCQEVYSGLQSQVGLVNQVADGFSWMLLRCIHDDQKVHSAQRFALKAVCNTKLSVALTIMEECFLSMLDPRTGIHMIPQVLYNWGSDFARLNFQGFYTVVLEKQDVLISVASIRVHGTTVAEMPLIATCSRYRRQGMCRLLVNAIEEMLISVKVEKLVIAAIPDLVETWTKGFGFVPVDDIEKQRLNKINLMVFPGTVLLEKPLYRKEKSEGLCDQSTLATDESIKVSICSEGMAIAESLPQDAGNITTDEVGAKSEYEPVDGKNQLDQRAGSETSRDDNTQAVYAALGAKESTETSSCVREEKISHLVVSGESEESIEGSIQELRKSNKMQMASELVQQSSENCCANKDGTESGVKIIEGKNIKTDVQENALHGHFSNMSCKTFSSSNFDRDSNIECSVMYDETAFFGTLAKSAS 1412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi8g00101 1412 Pfam Tify domain binding domain 826 876 IPR032308 -
Sebi8g00101 1412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 894 945 IPR013083 -
Sebi8g00101 1412 ProSiteProfiles Zinc finger PHD-type profile. 901 946 IPR019787 -
Sebi8g00101 1412 PANTHER PHD FINGER FAMILY PROTEIN 1 1345 - -
Sebi8g00101 1412 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 1054 1201 IPR000182 GO:0016747
Sebi8g00101 1412 Gene3D - 1075 1188 - -
Sebi8g00101 1412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 946 1002 IPR013083 -
Sebi8g00101 1412 CDD PHD1_AIRE 904 943 - -
Sebi8g00101 1412 MobiDBLite consensus disorder prediction 1251 1275 - -
Sebi8g00101 1412 Pfam PHD-finger 904 945 IPR019787 -
Sebi8g00101 1412 SMART PHD_3 945 999 IPR001965 -
Sebi8g00101 1412 SMART PHD_3 903 944 IPR001965 -
Sebi8g00101 1412 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 1090 1177 IPR016181 -
Sebi8g00101 1412 SUPERFAMILY FYVE/PHD zinc finger 890 945 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi8g00101 Sebi-Chr8 3390024 3397685 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi8g00101 1 408 PHD Transcription Factor Family AT3G14980 34.450 3.01e-48 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi8g00101 TDBD 9.7e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi8g00101 - - lja:Lj3g3v1061160.1 2092