Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi8g00098 ATGTCGCATTCGTCGGGAAAACCCGTTTCTGAAGTGGTCGGTTTAGACACTTTCACCGATCGGTTCCGAGACACGTTGAACTGTGAGGCTAACAAACCAGACTTCCGAGAACTTGATCTGGGTTCGCCCGTTTCGCCATTGCGGACCCGTGGACCCGCCGCGAGTAGCAGTTCTGGTTCCTCTGGATCAGTCTCTGCAGGGCGAAACGGGCAAAACCCGGTTCCAAAAAGATCCGATTCAGCAACCAACAACAATACCAACAACTCCGGCGAGCTTTCCGGCTCCAGTGAGAACAGCCCCACCGCCGCGGCGGAGAGCCAGCGATCCGCCGGGAATAATGCGCGGGGCTTCAAACCGGGTCACGTGAGATCCGATTTTGGATCCGCCCCGATGCCGTTAATCTATTCGGGTCAGACAGTGAACTCGCCGGCGCTTAATGTTCTTCCCACCGGAAACATTTGCCCCTCCGGTAGGATCATCAAGACCGGCATGTCGGCGAATCGGGGCTCCCGGAGCGACGTTCTCGGCTCCGGGACGGGGAACTACGGTCACGGCAGCATAATGCGCGGCGGTTCAGCCGCCGCTGCTAAAGGAGACACGGCGAATGTGAGATGCAGCATTGGCAATGATAAGAGAGGAGTGCAGAGTGTGGATCCAGAAGAGCTAAAGAGAGCAGGGAATGAGCATTATAAGAAGGGTCACTTTGCAGATGCATTGAGTCTTTATGACCGTGCAATTGCGTTGTCGCCGGCCAGTGCCGCCTACCGGAGCAACCGTGCGGCGGCGCTGACTGGGTTAGGACGGCTGGCGGAGGCGGTGAGGGAATGTGAGGAGGCTGTTAGGTTAGATCCTAATTATGGAAGGGCTCATCAGCGTTTGGCTTCTCTTTTCCTCAGGTTAGGACAAGTTGAGAATGCTAGGAAGCACCTCTGTTATCATGGGCTGCAACCGGATCCGTCTGAGATGCAGAAGTTGCAAATGGTGGAAAAGCATATTAGCAAATGTGCAGATTTCAGGAGGATAGGGGATTGGAAAAGTGTTCTGAGGGAAGTTGATGCTGCTGTTGCTGCTGGAGCAGACTCTTGTCCTCAGCTCTTTATTTGTAGAGCAGAAGCCCTTTTGAAGGTTCATCAAATTGATGATGCAGAATCAATTTTGTCACATGTTCCCAAATCAGAACCACATACAAATTCCTCTTCTCAAGCAAGATTTTTTGGGATGCTTTCTGAAGCTTATTCCTACTTTGTCAGAGCTCAGATTGAGATGGCATTAGGAAGGTTTGAGAATGCAGTCACAGCTGCTGAGAAAGCCAGTCAGATCGATCCCCGAAATGTTGAAGTTGCTGTTTTGCTCAACAATGTAAGGTTGGTGGCAAGAGCACGAGTGCGTGGCAATGATCTTTTTAAATCTGAAAGGTTCACTGAAGCTTGCTCAGCATATGGGGAGGGTTTAAGACTTGACCCTTCTAATTCTGTTCTATATTGCAATAGAGCAGCTTGCTGGTTCAAGCTTGGTCAATGGGAAAGATCAATTGAAGACTCCAACAAAGCTTTACATATCCAGCCAAATTACACAAAAGCTCTTCTTCGAAGGGCTGCATCAAATAGCAAGCTAGAAAGGTGGGAAGAAGCAGTCAAAGATTATGAGGTCTTGCGAAGAGAACTTCCAAATGACAATGAAGTAGCTGAAGCTCTTTTTCATGCACAAGTTGCACTAAAGAAATCACGCGGGGAAGAAGTATATAATTTAAAATTTGGTGGTGAAGTGGAAGAAGTATCAGGTCTTGAGCAGTTTAGAGCTGCAATATCTTTACCAGGTGTTTCTGTTGTCCATTTTGAAGTTGCATCTAACTCGCAATGCAAACAAATAGCACCATTTGTGGATACACTATGTGGTCGATATCCATCTATCAACTTCCTCAAGGTGGACATTCAAGAAAGCCCAACAGTTGCAACTGCTGAGAATGTTAGGATTGTACCAACCTTCAAGATATACAAAAATGGCAGTAGAGTGAAGGAAATAGTATGCCCTAGTCGCGACATGTTGGAACACTCTGTGAGGCATTACAGCATTTAG 2076 0.4836 MSHSSGKPVSEVVGLDTFTDRFRDTLNCEANKPDFRELDLGSPVSPLRTRGPAASSSSGSSGSVSAGRNGQNPVPKRSDSATNNNTNNSGELSGSSENSPTAAAESQRSAGNNARGFKPGHVRSDFGSAPMPLIYSGQTVNSPALNVLPTGNICPSGRIIKTGMSANRGSRSDVLGSGTGNYGHGSIMRGGSAAAAKGDTANVRCSIGNDKRGVQSVDPEELKRAGNEHYKKGHFADALSLYDRAIALSPASAAYRSNRAAALTGLGRLAEAVRECEEAVRLDPNYGRAHQRLASLFLRLGQVENARKHLCYHGLQPDPSEMQKLQMVEKHISKCADFRRIGDWKSVLREVDAAVAAGADSCPQLFICRAEALLKVHQIDDAESILSHVPKSEPHTNSSSQARFFGMLSEAYSYFVRAQIEMALGRFENAVTAAEKASQIDPRNVEVAVLLNNVRLVARARVRGNDLFKSERFTEACSAYGEGLRLDPSNSVLYCNRAACWFKLGQWERSIEDSNKALHIQPNYTKALLRRAASNSKLERWEEAVKDYEVLRRELPNDNEVAEALFHAQVALKKSRGEEVYNLKFGGEVEEVSGLEQFRAAISLPGVSVVHFEVASNSQCKQIAPFVDTLCGRYPSINFLKVDIQESPTVATAENVRIVPTFKIYKNGSRVKEIVCPSRDMLEHSVRHYSI 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi8g00098 691 Gene3D Tetratricopeptide repeat domain 217 577 IPR011990 GO:0005515
Sebi8g00098 691 Pfam Tetratricopeptide repeat 225 285 - -
Sebi8g00098 691 FunFam TPR repeat-containing thioredoxin TTL4 583 690 - -
Sebi8g00098 691 ProSiteProfiles TPR repeat profile. 219 252 IPR019734 GO:0005515
Sebi8g00098 691 Gene3D Glutaredoxin 584 690 - -
Sebi8g00098 691 MobiDBLite consensus disorder prediction 22 36 - -
Sebi8g00098 691 SUPERFAMILY Thioredoxin-like 494 689 IPR036249 -
Sebi8g00098 691 MobiDBLite consensus disorder prediction 49 113 - -
Sebi8g00098 691 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 25 688 IPR044534 -
Sebi8g00098 691 SMART tpr_5 363 396 IPR019734 GO:0005515
Sebi8g00098 691 SMART tpr_5 411 444 IPR019734 GO:0005515
Sebi8g00098 691 SMART tpr_5 219 252 IPR019734 GO:0005515
Sebi8g00098 691 SMART tpr_5 525 558 IPR019734 GO:0005515
Sebi8g00098 691 SMART tpr_5 457 490 IPR019734 GO:0005515
Sebi8g00098 691 SMART tpr_5 491 524 IPR019734 GO:0005515
Sebi8g00098 691 SMART tpr_5 253 286 IPR019734 GO:0005515
Sebi8g00098 691 SUPERFAMILY TPR-like 219 447 IPR011990 GO:0005515
Sebi8g00098 691 ProSiteProfiles TPR repeat profile. 491 524 IPR019734 GO:0005515
Sebi8g00098 691 ProSiteProfiles TPR repeat profile. 411 444 IPR019734 GO:0005515
Sebi8g00098 691 CDD TRX_family 596 683 - -
Sebi8g00098 691 MobiDBLite consensus disorder prediction 1 124 - -
Sebi8g00098 691 Pfam Thioredoxin 597 682 IPR013766 -
Sebi8g00098 691 Pfam Tetratricopeptide repeat 412 444 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi8g00098 Sebi-Chr8 3219627 3222502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi8g00098 456 601 U-box Gene Family AT3G07370 28.962 2.32e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi8g00098 - - gmx:100795358 1055.82