Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi8g00088 ATGACTACTAAATTTTCCCCTCCAACAATTCCTCCTAATGCTACACTCCAATTCGATGTTGAGCTACTGTCTTGGACTAGTGTGAAGGACATATGTAAAGATGGCGGCATATTTAAGAAGATACTTACTGTGGGGGAGAAGTGGGAGAACCCCAAGGATCCTGATGAAGTATTGGGTATATGTATACTTCTCATTATGAGGTTCGAAGATGGTAAGCTTGTTGCAAAGTCTGATGGGGTGGAGTTCACCGTCAACGAGGGTCATTATTGTCCTGCATTGTCAAAGGCTGTTAAAACCATGAAGAAAGGAGAGAAAGTGATTTTGACAGTAAAGCAACAATATAAGTTGTATGGATTTGGTGAGAAGGGACAGCCAGCATATGGTGATGAAGGTGCAATTCCTCCAAATGCAACATTGCAGATTACTCTTGAGTTAGTTTCTTGGAAGACTGTATCAGAAGTAACTGGTGACAAGAAGGTCATAAAGAAGATCCTCACTGAAGGGGAAGGATATGAGCGTCCAAATGAAGGGGCCATTGTGAAATTGAAACTAATTGGTAAGCTGCAAGATGGCACTGTCTTTTCAAAAAAGGGCCATGGTGAAGATGAGCAGCTGTTTGAATTCAAAACAGATGAGGAACAAGTCATTGACGGACTTGATAGAGCTGTAATGACTATAAAGAAGGTGATCCCTCCTAACTCAACTGTGTATTATGAAGTTGAGCTAGTGTCATTTGAGAAGGAGAAGGAATCCTGGGATCTGAACACTCAAGAGAAACTTGAAGCTGCTGGTAAGAAGAAAGAAGAAGGGAATGTGTTGTTTAAAGCTGGTAAATATGCTAGAGCTTCCAAAAGGTATGAGAAGGCTGTGAAGTACATCGAGTATGATTCCTCCTTCAACTATAAAGAAGCAGAGAAATTGTGTACCAAGGTGTTGGACCTTGAGACCACAAACGTTAAAGCCCTCTATAGAAGGGCCCAGGCATATATGCAGTTGGCTGATTTGGATTTGGCTGAATTGGACATCAAGAAAGCTCTTGAGATTGACCCTGACAACAGGGATGTCAAGCTGGAATACAAGACTTTGAAGGAAAAAGTAAAGGAGTATAACAAAAAGGAGGCGAAATTTTATGGAAATATGTTCAAGTTTACAAAGACCGGATCCTGA 1167 0.4105 MTTKFSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILTVGEKWENPKDPDEVLGICILLIMRFEDGKLVAKSDGVEFTVNEGHYCPALSKAVKTMKKGEKVILTVKQQYKLYGFGEKGQPAYGDEGAIPPNATLQITLELVSWKTVSEVTGDKKVIKKILTEGEGYERPNEGAIVKLKLIGKLQDGTVFSKKGHGEDEQLFEFKTDEEQVIDGLDRAVMTIKKVIPPNSTVYYEVELVSFEKEKESWDLNTQEKLEAAGKKKEEGNVLFKAGKYARASKRYEKAVKYIEYDSSFNYKEAEKLCTKVLDLETTNVKALYRRAQAYMQLADLDLAELDIKKALEIDPDNRDVKLEYKTLKEKVKEYNKKEAKFYGNMFKFTKTGS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi8g00088 388 Pfam Tetratricopeptide repeat 319 352 IPR001440 GO:0005515
Sebi8g00088 388 SUPERFAMILY FKBP-like 152 263 - -
Sebi8g00088 388 Gene3D Tetratricopeptide repeat domain 245 298 IPR011990 GO:0005515
Sebi8g00088 388 FunFam Peptidylprolyl isomerase 29 149 - -
Sebi8g00088 388 SUPERFAMILY TPR-like 252 381 IPR011990 GO:0005515
Sebi8g00088 388 Gene3D Tetratricopeptide repeat domain 299 382 IPR011990 GO:0005515
Sebi8g00088 388 ProSiteProfiles TPR repeat profile. 319 352 IPR019734 GO:0005515
Sebi8g00088 388 Gene3D - 150 229 IPR046357 GO:0003755
Sebi8g00088 388 PANTHER PEPTIDYLPROLYL ISOMERASE 300 382 - -
Sebi8g00088 388 SUPERFAMILY FKBP-like 5 148 - -
Sebi8g00088 388 Gene3D - 26 149 IPR046357 GO:0003755
Sebi8g00088 388 SMART tpr_5 319 352 IPR019734 GO:0005515
Sebi8g00088 388 SMART tpr_5 263 296 IPR019734 GO:0005515
Sebi8g00088 388 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 67 149 IPR001179 GO:0003755
Sebi8g00088 388 Coils Coil 352 372 - -
Sebi8g00088 388 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 177 246 IPR001179 GO:0003755
Sebi8g00088 388 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 67 146 IPR001179 GO:0003755
Sebi8g00088 388 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 171 227 IPR001179 GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi8g00088 Sebi-Chr8 2852197 2854618 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi8g00088 6 381 Calmodulin-binding Proteins AT3G25230 68.852 0.0 574
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi8g00088 K09571 - gmx:100812632 620.157