Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi8g00079 ATGTCGTTGAGGAAGGTCTTTCGCTCTCGCAAATTCTCCAGATCCTTCAAGGAAGTCCGGGCCCTTGACACCGCCGACGACGGCGACCGCCTCGATGCCGCCGGCGACGAAGGCAATGCGTGGTCCAACTTGCTACCGGAACTTCTCGGGGAGATTATTCGCCGGGTCGACACCGCCGAGGACCAGTGGCCCCACCGCCAAAACGTCGTCTCTTGCGCCTGCGTTTGCAAGCGATGGAGGGACATGACCCGCGAGATCGTAAGGTCTCCTTCTCACAAGGGCAAAATCACTTTCCCTTCTTGCCTTAAACAGCCAGGACCACGTGAGCAACCCCACCAATGTCTTATAAAGCGGAACAAGAAGACCTCAACATTTTACCTCTATCTTGCCCTTACACCATCATTCACAGACAAAGGGAAGTTTCTGTTAGCAGCTAGGAGATATAGGTGTGGTACCCATACTGAGTATATAATATCGCTTGATGCTGATGACTTATCCCAAGGAAGCAATGCGTATGTTGGAAAGTTGAGCTCGGATTTTCTTGGCACCAACTTCACAATTTATGACAGCCAGCCACCCCATAGCGGTGCCAAACCATCAAGTGGCAGGGCCAGTCGTCGTTTTGCCAGCAAGCAGATAAGTCCTCAAGTTCCTGCAGGTAACTTTGAGGTGGGGCAGGTCTCCTACAAGTTCAACCTTTTGAAATCAAGAGGTCCAAGGAGGATGGTTTGCTCACTGAAGTGTCCTGTCTCATCAACGGGTGCAAGTTCAGATAGCATGTCACCAGATGGCCATAAAATGGATGATAAAGAACTTGCTGCTTCTGGCTACACAATCTTGAAGAATAAAGCTCCAAGATGGCATGAGCATTTGCAGTGCTGGTGCTTGAATTTCCATGGTCGTGTGACAGTGGCATCAGTGAAGAACTTTCAGCTGGTTGCTACTGTGGATCAAAGCCAACCAGGAGGGAAAGGAGATGAGGAAACAGTTCTTCTCCAATTTGGTAAAGTAGCGGATGATACTTTTACCATGGATTATAGGCAACCCTTATCTGCCTTCCAGGCGTTTGCCATTTGCTTAACTAGCTTTGGCACTAAACTGGCTTGTGAGTAA 1113 0.4942 MSLRKVFRSRKFSRSFKEVRALDTADDGDRLDAAGDEGNAWSNLLPELLGEIIRRVDTAEDQWPHRQNVVSCACVCKRWRDMTREIVRSPSHKGKITFPSCLKQPGPREQPHQCLIKRNKKTSTFYLYLALTPSFTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKCPVSSTGASSDSMSPDGHKMDDKELAASGYTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVADDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi8g00079 370 PANTHER TUBBY-RELATED 37 368 - -
Sebi8g00079 370 Pfam F-box domain 41 88 IPR001810 GO:0005515
Sebi8g00079 370 ProSitePatterns Tub family signature 1. 298 311 IPR018066 -
Sebi8g00079 370 Gene3D Tubby Protein; Chain A 97 370 IPR025659 -
Sebi8g00079 370 SUPERFAMILY Tubby C-terminal domain-like 90 370 IPR025659 -
Sebi8g00079 370 ProSitePatterns Tub family signature 2. 355 370 IPR018066 -
Sebi8g00079 370 CDD F-box_AtTLP-like 41 85 - -
Sebi8g00079 370 Gene3D - 36 91 - -
Sebi8g00079 370 PRINTS Tubby superfamily signature 327 346 IPR000007 -
Sebi8g00079 370 PRINTS Tubby superfamily signature 298 314 IPR000007 -
Sebi8g00079 370 PRINTS Tubby superfamily signature 172 196 IPR000007 -
Sebi8g00079 370 PRINTS Tubby superfamily signature 280 297 IPR000007 -
Sebi8g00079 370 PRINTS Tubby superfamily signature 348 370 IPR000007 -
Sebi8g00079 370 PRINTS Tubby superfamily signature 221 248 IPR000007 -
Sebi8g00079 370 PRINTS Tubby superfamily signature 156 172 IPR000007 -
Sebi8g00079 370 Pfam Tub family 102 365 IPR000007 -
Sebi8g00079 370 SUPERFAMILY F-box domain 39 84 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi8g00079 Sebi-Chr8 2639663 2644558 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi8g00079 1 370 TUB Transcription Factor Family AT1G53320 73.087 0.0 553
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Sebi8g00079 Tub 3.1e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi8g00079 K19600 - gmx:100808096 648.662