Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi8g00016 ATGGGACGTCGACACAACAAGATGTGGTTTGTGATTTCAAGCTTCAAACGCGTATCTGTGTTCTTCTATGTGTTCCTCGCTTTGAATTGCTTCGGAGAGTTTGGATCCAACGCTCAACTCATACCACAAGATGAAGTGAAATTACTACAAACAATATCAGACAAGGTAGAGAACTTGAATTGGAAAGTTACAGAACGTTCCTGCAGTGGGGATAATGGATTTGGTAACCAGGATATCTCAGGGGATCAAATCACAAGGAATGTCACGTGTGATTGCTCTTTCAACGCTAGCACCATTTGCCATGTGAAATTTATGTCACTTTTGGGAAATCGACTTAGTGGTCCAATTCCCTCAGAAATCGGTGATATTGCTAGTTTGCAAGAACTGAACTTAGAAGATAATCAACTTGGAGGACCACTTCCTCCCAGCCTTGGAAATTTAAGAAGCTTACTGAGATTATTGCTTTCTGCAAATAACTTTACAGGGACAATACCAGAGACATTAGGCAATCTAAACAATCTCACTCAGTTTAGGATAGATGGGAGCAGTTTATCTGGGAAGATTCCAAGTTTTATTGGGAACTGGACCAAGCTTGAAAGATTGGATTTGCAGGGCACATCTTTGGAAGGCCCAATTCCTCCCGCCATATCTGGCTTGACAAATTTGAAGGAATTGAGAATATCTGATTTGACGGGACCAACTATGACATTTCCTGATCTGAAGGATTTGAAACGCATGCAAACACTGGAATTGAGAAATTGCTTAATCACTGGTCTCATTCCAGACTACATTGGCGAAATGGAAAGTTTAAAAACTCTGGATTTGAGCTTCAACAGGTTGTCCGGTTCCATCCCAGATTCATTTCAGCACTTGAAATCAGTGAATTACATGTTTCTAACTAACAACTCTCTGAGTGGACCAATCCCTGGATGGATACTAAATAGCAAACAGAACATTGATTTGTCTTTCAACAATTTTTCAGAGTCTTCTGCATCTAGATGCCAGCGCTTGGATGTGAACTTAGCTGCCAGCCACTCTCCTTTAGCAAACACTTCATTGTCTTGTTTGAAGATGGACCTGCCTTGTTCAGGAAAACCCCAGTATCATTCATTGTTCATAAACTGTGGAGGACCTGCAACAGAGTTTAAGGGCAAAAAATATGAACCCGACACCAGTCTACGTGGCATTTCACACTTTGTTCGTAGTAATGACGGTAGTTGGGCTCATAGCAGCACTGGAGTATATCTAGGAAATGAAAAGGCTGATTATGTAGCAACAAATGAGTTCTCTTTGAATATTAATGGCCCTGAATACTTCCAAACAGCCCGCATGGCCCCTTTGTCTCTTAATTACTTTGGATTTTGTATGTTGAAGGGCAATTATAAAGTGAAGCTTCATTTTGCTGAGATAATGTTTTCTGATGACAAGACATTCAGCAGCCTTGGAAGGCGTATATTTGATGTATCAATTCAAGGTGTTAAATATTTGAAAGATTTTAACATTGTGAAAGAAGCTGGTGGAGTTGGCAAGGGAGTCACTAAGGAGTTTAATGTTGATGTTAATGATAGCACCTTGGAAATCCACTTATCCTGGGCAGGGAAAGGAACTAATGCCACTCCTTTGAGAGGTGTATATGGTCCTCTTATATCTGCTATTACTGTGACCCCAAACTTTAAAGTTCCTTCAAATGGATTGTCTACTGGAGCAATTGTTGGAATTGTGACTGCATCATGTGTACCTGTCATACTGATACTCTTTGCCTTATGGAAGATGGGTTTCCTCAAGGGGAAAGATCCAACAGACAAAGAACTTCTAGATCTGAAAACAGGATATTTTAGTTTGAGACAAATTAAAGCTGCTACTGATAACTTTGACCCAGCAAATAAGATAGGGGAAGGAGGCTTTGGGCCAGTGTACAAGGGTGTATTTCCAGATGGTGCAGCGATTGCCGTTAAGCAACTCTCCTCCAAATCAAAGCAAGGAAACCGTGAATTCGTTACTGAAATAGGAATGATATCTGCTTTGCAGCATCCAAATCTTGTGAAGCTTTATGGTTGTTGCATTGAAGGAAACCAATTGTTACTTATATATGAATACATGGAGAACAATAGTCTTGCTCGAGCACTTTTTGGTAAAGAAGAACAAAGTATGCACTTGGAGTGGCCCACAAGAATGAAGATTTGTGTGGGGATAGCAAAGGGATTGTCTTATCTACATGAAGAATCAAGGTTGAAAATAGTACACAGGGATATTAAGGCAACCAATGTCTTGCTTGATAAGCATCTGAATGCCAAGATCTCTGACTTTGGTTTAGCCAAGCTTGATGAAGAAGAGAATACTCATATCAGCACACGAATAGCTGGGACAATGCCAAAGGAGGAGTTTGTTTATCTTCTGGATTGGGCCCACGTTCTCCATGAGCAAGGAAACCTTCTAGAATTGGTTGATCCAAGTCTTGGTTCAAGCTACTGCCCAGAAGAGGCCATGAGAATGCTGCAGGTGGCACTTGTGTGCACCAATCCATCACCCACTCATAGGCTACCCATGTCAACTGTAGTGAGCATGCTTGAAGGAAAAACTCCAATTCAAGCACCAATAGTTAAATGCAGTGATAGTACACAAGATGCAAGATTTAAAGCCTTTGAGATGCTATCACAAGACAGCCAAACTAATGTTTCTTCTACATTCATACAAGATAGTATGGAGCAAAGAAGCAAATCAGTGGATGGGCCATGGGTTGACTCCTCCGTATCTCTTCCAAGTAGAGACGATTAA 2775 0.4086 MGRRHNKMWFVISSFKRVSVFFYVFLALNCFGEFGSNAQLIPQDEVKLLQTISDKVENLNWKVTERSCSGDNGFGNQDISGDQITRNVTCDCSFNASTICHVKFMSLLGNRLSGPIPSEIGDIASLQELNLEDNQLGGPLPPSLGNLRSLLRLLLSANNFTGTIPETLGNLNNLTQFRIDGSSLSGKIPSFIGNWTKLERLDLQGTSLEGPIPPAISGLTNLKELRISDLTGPTMTFPDLKDLKRMQTLELRNCLITGLIPDYIGEMESLKTLDLSFNRLSGSIPDSFQHLKSVNYMFLTNNSLSGPIPGWILNSKQNIDLSFNNFSESSASRCQRLDVNLAASHSPLANTSLSCLKMDLPCSGKPQYHSLFINCGGPATEFKGKKYEPDTSLRGISHFVRSNDGSWAHSSTGVYLGNEKADYVATNEFSLNINGPEYFQTARMAPLSLNYFGFCMLKGNYKVKLHFAEIMFSDDKTFSSLGRRIFDVSIQGVKYLKDFNIVKEAGGVGKGVTKEFNVDVNDSTLEIHLSWAGKGTNATPLRGVYGPLISAITVTPNFKVPSNGLSTGAIVGIVTASCVPVILILFALWKMGFLKGKDPTDKELLDLKTGYFSLRQIKAATDNFDPANKIGEGGFGPVYKGVFPDGAAIAVKQLSSKSKQGNREFVTEIGMISALQHPNLVKLYGCCIEGNQLLLIYEYMENNSLARALFGKEEQSMHLEWPTRMKICVGIAKGLSYLHEESRLKIVHRDIKATNVLLDKHLNAKISDFGLAKLDEEENTHISTRIAGTMPKEEFVYLLDWAHVLHEQGNLLELVDPSLGSSYCPEEAMRMLQVALVCTNPSPTHRLPMSTVVSMLEGKTPIQAPIVKCSDSTQDARFKAFEMLSQDSQTNVSSTFIQDSMEQRSKSVDGPWVDSSVSLPSRDD 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi8g00016 924 Gene3D - 369 557 - -
Sebi8g00016 924 Pfam Protein tyrosine and serine/threonine kinase 628 781 IPR001245 GO:0004672|GO:0006468
Sebi8g00016 924 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 595 699 - -
Sebi8g00016 924 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 145 175 IPR000225 GO:0005515
Sebi8g00016 924 MobiDBLite consensus disorder prediction 898 914 - -
Sebi8g00016 924 MobiDBLite consensus disorder prediction 898 924 - -
Sebi8g00016 924 Gene3D Transferase(Phosphotransferase) domain 1 700 791 - -
Sebi8g00016 924 Gene3D Ribonuclease Inhibitor 232 352 IPR032675 -
Sebi8g00016 924 Gene3D Transferase(Phosphotransferase) domain 1 792 874 - -
Sebi8g00016 924 SMART serkin_6 624 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi8g00016 924 Pfam Leucine Rich Repeat 125 147 IPR001611 GO:0005515
Sebi8g00016 924 SUPERFAMILY L domain-like 96 329 - -
Sebi8g00016 924 ProSiteProfiles Leucine-rich repeat profile. 269 291 IPR001611 GO:0005515
Sebi8g00016 924 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 791 888 - -
Sebi8g00016 924 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g53440 232 355 - -
Sebi8g00016 924 Pfam Malectin domain 371 552 IPR021720 -
Sebi8g00016 924 ProSitePatterns Serine/Threonine protein kinases active-site signature. 746 758 IPR008271 GO:0004672|GO:0006468
Sebi8g00016 924 Gene3D Phosphorylase Kinase; domain 1 592 699 - -
Sebi8g00016 924 Gene3D Ribonuclease Inhibitor 58 231 IPR032675 -
Sebi8g00016 924 SUPERFAMILY Protein kinase-like (PK-like) 608 857 IPR011009 -
Sebi8g00016 924 FunFam Os07g0541700 protein 700 789 - -
Sebi8g00016 924 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 368 557 - -
Sebi8g00016 924 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 164 231 - -
Sebi8g00016 924 Pfam Leucine rich repeat 245 304 IPR001611 GO:0005515
Sebi8g00016 924 ProSiteProfiles Protein kinase domain profile. 624 924 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi8g00016 Sebi-Chr8 905710 993317 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi8g00016 8 923 Receptor kinase-like Gene Family AT1G53440 55.621 0.0 1077
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi8g00016 Malectin 7e-38 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi8g00016 - - gmx:121173337 1374.76