Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi8g00013 ATGGTTGCTCACTTTATTATACTTGTCCCAGCCTCATACTCTCTTCATATAAATTGTGGTGGAAAACCGATTACCATCAATACGAGCACATATGATGATGATTCAGATGTAGGAGGACCAGCTAGATTCCAACACAGTGGAACAAAAAACTGGGCATTTAGCACCACTGGTAACTTCATGGATAATGATGGTGGAAACTATTATACCTGGTCAAATAAATCTGAGCTTTCTATGACCAATGCTGAATTATATATGAATGCACGAGTGTCTCCCATCTCTTTAACTTATTATGGATTCTGCTTGGGGAATGGAAACTACACGGGAAAGTTGGTGCACAAGGACTTCAATATTGTAGAAGAAGCAGGAGGAGCGGGTAAAGTGATCACCAAACAATTCACTGTTGTTGTGACTAGTAATACCTTGGAAATCCGCTTATATTGGGCTGGAAAAGGGACAACCAGTATCCCATTTAGATCAGTATATGGTCCTCTTATATCAGCTATATCTGTGGAACCTGACTTTACACCTCCCTCTGAAAACGGAAGCAGCATATCTGCAGGAGCTGTGGTTGGAATTGTGGTTGCAGTAGTAGCTGTTATCATGTTGGTCTTTGGTATACTCTGGTGGAAAGGATGTTTGGGGAAGAAAAACACTTTAGCAAGAGAGCTAAAGGGTTTAGACCTACAAACCGGTGTATTTACATTTAGACAGATCAAAGTTGCAACAAACAACTTTGATATTGCCAATAAGATTGGAGAAGGGGGATTTGGTCCTGTGTACAAGGGATGTCTACCAGATGGAACATTAATAGCAGTCAAGCAACTTTCTTCAAAATCAAAGCAAGGGAATCGTGAGTTTTTAAATGAAATAGGCATGATTTCTGCTTTGCAGCACCCTTGTCTTGTTAAACTATATGGATGTTGTGTGGAGGGAGATCAACTATTGTTGATATATGAATATATGGAAAACAATAGTCTTGCTCGTGCTTTATTTGGCCCCGAAGAACACCAAATAAAATTGGATTGGCCAACAAGGTACAAGATTTGTATTGGTATTGCTAGAGGTTTGGCACACCTCCATGAAGAATCAAGGCTAAAGGTTGTTCATAGGGACATCAAGGCTACTAATGTGTTGCTTGATGAAGATCTCAATCCAAAGATATCTGACTTTGGTTTGGCCAAGCTCGATGAAGAGGACAATACCCACATTAGCACTCGAATAGCTGGGACATATGGGTATATGGCTCCGGAATATGCCATGCATGGTTATTTGACTGATAAGGCAGATGTTTATAGCTTTGGAATTGTTGCCTTGGAAATAATAAATGGAAGGAATAACACCACTCATCGACAAAAGAAGAAGCATTCTATCTTCTTGATTGGCCAACAAATTAATTGCCTTTTACTCAATTGTAAATTTATCATAGAAGCACGTCTATTGAAAGAGAAAGGTAATCTAATGGAGTTAGTTGATAGAAGATTGGGTTCAGAATTCAACAAAGAGGAGGTAATGGTGATGATCAACATGGCTCTCCTATGTACTAATGTGACTCCAACACTTAGGCCTACCATGTCTTCAGTGGTAAGCATGCTAGAAGGTAGGATTGTTGTTCCGGAAGTGGTTTCAGAGACAAGTGAGGTATTGGATGAGAAGAAGTTAGAGGCAATGCGACAATTTTATCATGAGCAAAGTATTTCAATGGAAGGGCCGTGGACTACTTCATCTACTTCTGCAGCAGACCTTTATCCTGTACACTTGGATTCTGCTTACTTGGAGAAGAGAAATTAG 1788 0.3982 MVAHFIILVPASYSLHINCGGKPITINTSTYDDDSDVGGPARFQHSGTKNWAFSTTGNFMDNDGGNYYTWSNKSELSMTNAELYMNARVSPISLTYYGFCLGNGNYTGKLVHKDFNIVEEAGGAGKVITKQFTVVVTSNTLEIRLYWAGKGTTSIPFRSVYGPLISAISVEPDFTPPSENGSSISAGAVVGIVVAVVAVIMLVFGILWWKGCLGKKNTLARELKGLDLQTGVFTFRQIKVATNNFDIANKIGEGGFGPVYKGCLPDGTLIAVKQLSSKSKQGNREFLNEIGMISALQHPCLVKLYGCCVEGDQLLLIYEYMENNSLARALFGPEEHQIKLDWPTRYKICIGIARGLAHLHEESRLKVVHRDIKATNVLLDEDLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTDKADVYSFGIVALEIINGRNNTTHRQKKKHSIFLIGQQINCLLLNCKFIIEARLLKEKGNLMELVDRRLGSEFNKEEVMVMINMALLCTNVTPTLRPTMSSVVSMLEGRIVVPEVVSETSEVLDEKKLEAMRQFYHEQSISMEGPWTTSSTSAADLYPVHLDSAYLEKRN 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi8g00013 595 ProSitePatterns Serine/Threonine protein kinases active-site signature. 367 379 IPR008271 GO:0004672|GO:0006468
Sebi8g00013 595 FunFam Putative LRR receptor-like serine/threonine-protein kinase 321 543 - -
Sebi8g00013 595 Pfam Protein kinase domain 247 528 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi8g00013 595 Pfam Malectin domain 14 107 IPR021720 -
Sebi8g00013 595 Pfam Malectin domain 108 168 IPR021720 -
Sebi8g00013 595 SUPERFAMILY Protein kinase-like (PK-like) 228 563 IPR011009 -
Sebi8g00013 595 Gene3D Phosphorylase Kinase; domain 1 213 320 - -
Sebi8g00013 595 ProSiteProfiles Protein kinase domain profile. 245 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi8g00013 595 Gene3D Transferase(Phosphotransferase) domain 1 321 547 - -
Sebi8g00013 595 Gene3D - 11 107 - -
Sebi8g00013 595 Gene3D - 108 172 - -
Sebi8g00013 595 SMART serkin_6 245 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi8g00013 595 CDD STKc_IRAK 251 533 - -
Sebi8g00013 595 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 214 320 - -
Sebi8g00013 595 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 35 566 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi8g00013 Sebi-Chr8 785457 789293 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi8g00013 13 580 Receptor kinase-like Gene Family AT1G07650 53.934 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi8g00013 Pkinase 4.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi8g00013 - - gmx:732563 884.019