Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi8g00012 ATGCATTTCTCTTCTTGGCAATCGACTAACTGGCCCGATCCCAGCAGAGCTGGCAAACCTCACCAATCTCAAACGATCCTTGAGTTCAATCGATTCACTGGAAATCTTCCTCCAGAACTTGGGAATCTTGCTCACCTAGAAAAATTGCATCTAAGCTCCAACAACTTTACCGGAGAATTGCCTGCAACTCTTGGGAGGCTTACTACAATGAGAGAATTTCGAATTAGTGACAATCAATTCTCTGGCAACATACCCGATTTTATTCAAAGATGGACAAGTCTTGGTCAATTATTCATTCAAGGGAGTGGTTTAAGTGGACCAATTCCTTCTGGAATTTCATTTTTGCGAAACTTAATGGACTTGAGGATTAGTGACTTGAATGGTCCTGATTCTACTTTTCCACGAGTTGATAATATGACAGGACTGAACACATTGATATTAAGGAGTTGTAATATTAATGATACACTTCCTCAGTATTTTGCACACCTGATAAATTTGACAATCTTAGACCTCAGCTATAACAAATTAAGTGGGGACATTCCAAGAAACCTTGAAGGGTTAACAGGAGCAACCTACATATATTTAACAGGGAACTTTCTCACTGGACAAGTGCCTGAATGGACAAATAGCACTAAAAGAAACTTAGATCTTTCCTATAATAACTTCAGTGTTGAAAACCCTGAGCCAGAGGCATGTTTTGAGCAAAATGTGAATTTGTTTGCAAGCTTTTCAAGGAACAATTTAGGACCAGTTTCTTGCAAGAACAACACTAGAATCTGTACTAAAACCGTTAAATCTCTACATATAAATTGTGGTGGAAAACAGACTGTCATTGAAGGTATAACATATGATGAAGATATAGATCCAGCTGGACCAGCAGTGTATAAGCATAGTGGAGACAACTGGGCATTTAGCAACACTGGTCACTTCTTGGATAATAACACTGCAAAATATCTTCTCCCCTACACCACAGAAAATGAGACTAGACTTTATATGAGTGACACTGAATTATATAAGAATGCACGTATTTCTCCCGTGTCTTTGAGTTATTATGGATTTTGCCTTGAAAATGGAGACTACATGGTTAAGCTTCACTTTGCTGAGATAATGTTTGCTGATGATAACACATATAGCAGCCTAGGGAGGCGTGTGTTTGATGTCTACATTCAGGGCAATCGTGTACTATATGATTTCAACATTGCAAAGGAAGCACAAGGAGTTGGCAAGGAACTTATAAAACAATTTCTTGTTCATGTGAGTACTAATGACTTAGAGATCCGTTTCTATTGGGCTGGCAAAGGAACAACATACATCCCATATAAATCAATAAACGGTCCTCTTATATCAGCCATATCTGTTGAGTATGACTCTACAGGTGGCAGCATATCTACAGGGTCTATTTTTGCAATTGCAGCTGCAGTAGTGATTATTGTCATCTTGATTATTATCGGCATACTTTGGTGGGGAGGTTGTCTAGAGAAAAAGCATTTATTAGTAAGAGAGCTAAAGGATTTAGATATGCATACTGGTTTATTTACCTTACGTCAATTAAAAGCAGCAACAAATAACTTTGACATTTCTAATAAGATTGGCGAAGGTGGCTTTGGTCCAGTTTATAAGGGCATTCTGTCAAATGGCACAGTAATAGCAGTCAAACAACTTTCACCTAAATCAGAGCAAGGAAACCGTGAGTTCATAAATGAGATAGGCATGATCTCAGCTTTGCAGCATCCTTTTCTAGTTAAACTTTATGGTTGTTGTGTTGAGGGAGATCAATTGTTGGTGGTATATGAATATATGGAAAACAATAGCCTTGCACATGCTTTATTTGGTCTAGAAGAATGTCGTTTAAAATTGAATTGGCCAACAAGGCAGAAGATTTGTGTTGGTGTTGCTAGAGGTTTAGCTTTCCTACATGAAGAATCAAGACTGAAAGTTGTTCACAGGGACTTAAAGGCAGCTAATGTGTTGCTTGACAAAGACCTGAACCCAAAGATATCTGATTTTGGTTTGGCAAAACTTAATGAGGAGGACAATACTCACATAAGCACCAGAATAGCTGGGACCTTTGGATATATGGCTCCTGAGTATGCAATGCATGGTTACTTGACTGAGAAAGCAGATGTCTATAGTTTTGGAATTATTTCCTTGGAACTTGTAAGTGGAAAGAGAAACACTATTCACCGGTCAAAAGAAGAAGCATTCTATCTTCTTGATTGGGCACGTCTATTGAAAGAGAAAGGTAACCTAATGGAGCTAGTTGATCCAAGGTTGGGTGTCGATTTCAATGAAGAGGAGGTAATAACGATGGCCAAAGTGGCCCTCCTATGCACCAATGCCACTTCAAACCTTAGGCCCTCCATGTCTTCTGTGCTAAGCATGCTTGAGGGCAGAATTGTGCTTCCAGAATTTGTTCCACATCCAAGTGAGGTAATGGATGAGATTAAATTGGAAGCAATGAGAGAGTTTTACGGTCAGTTAGAAGGAAATAAAATAAGTGAGGCACAAAGTATGAGCTTGACAACTAACGTACCATGGACTACTTCATCTTCATCAACTACAGACCTCAATCCTCTCCATCTTGATGCTTCCCATTTGGAGGAAAAGAAATTAATAGAGTCCGTATAA 2628 0.3885 MHFSSWQSTNWPDPSRAGKPHQSQTILEFNRFTGNLPPELGNLAHLEKLHLSSNNFTGELPATLGRLTTMREFRISDNQFSGNIPDFIQRWTSLGQLFIQGSGLSGPIPSGISFLRNLMDLRISDLNGPDSTFPRVDNMTGLNTLILRSCNINDTLPQYFAHLINLTILDLSYNKLSGDIPRNLEGLTGATYIYLTGNFLTGQVPEWTNSTKRNLDLSYNNFSVENPEPEACFEQNVNLFASFSRNNLGPVSCKNNTRICTKTVKSLHINCGGKQTVIEGITYDEDIDPAGPAVYKHSGDNWAFSNTGHFLDNNTAKYLLPYTTENETRLYMSDTELYKNARISPVSLSYYGFCLENGDYMVKLHFAEIMFADDNTYSSLGRRVFDVYIQGNRVLYDFNIAKEAQGVGKELIKQFLVHVSTNDLEIRFYWAGKGTTYIPYKSINGPLISAISVEYDSTGGSISTGSIFAIAAAVVIIVILIIIGILWWGGCLEKKHLLVRELKDLDMHTGLFTLRQLKAATNNFDISNKIGEGGFGPVYKGILSNGTVIAVKQLSPKSEQGNREFINEIGMISALQHPFLVKLYGCCVEGDQLLVVYEYMENNSLAHALFGLEECRLKLNWPTRQKICVGVARGLAFLHEESRLKVVHRDLKAANVLLDKDLNPKISDFGLAKLNEEDNTHISTRIAGTFGYMAPEYAMHGYLTEKADVYSFGIISLELVSGKRNTIHRSKEEAFYLLDWARLLKEKGNLMELVDPRLGVDFNEEEVITMAKVALLCTNATSNLRPSMSSVLSMLEGRIVLPEFVPHPSEVMDEIKLEAMREFYGQLEGNKISEAQSMSLTTNVPWTTSSSSTTDLNPLHLDASHLEEKKLIESV 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi8g00012 875 Gene3D Ribonuclease Inhibitor 1 130 IPR032675 -
Sebi8g00012 875 Gene3D Ribonuclease Inhibitor 131 268 IPR032675 -
Sebi8g00012 875 FunFam Putative LRR receptor-like serine/threonine-protein kinase 600 806 - -
Sebi8g00012 875 ProSiteProfiles Leucine-rich repeat profile. 165 188 IPR001611 GO:0005515
Sebi8g00012 875 Gene3D Phosphorylase Kinase; domain 1 492 599 - -
Sebi8g00012 875 SUPERFAMILY L domain-like 27 234 - -
Sebi8g00012 875 MobiDBLite consensus disorder prediction 1 23 - -
Sebi8g00012 875 Pfam Leucine rich repeat 141 198 IPR001611 GO:0005515
Sebi8g00012 875 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 26 832 - -
Sebi8g00012 875 ProSitePatterns Serine/Threonine protein kinases active-site signature. 646 658 IPR008271 GO:0004672|GO:0006468
Sebi8g00012 875 FunFam Leucine-rich repeat transmembrane protein kinase 63 266 - -
Sebi8g00012 875 CDD STKc_IRAK 530 797 - -
Sebi8g00012 875 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 493 599 - -
Sebi8g00012 875 Gene3D Transferase(Phosphotransferase) domain 1 600 801 - -
Sebi8g00012 875 SMART serkin_6 524 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi8g00012 875 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 264 456 - -
Sebi8g00012 875 Pfam Malectin domain 266 451 IPR021720 -
Sebi8g00012 875 SUPERFAMILY Protein kinase-like (PK-like) 506 812 IPR011009 -
Sebi8g00012 875 ProSiteProfiles Protein kinase domain profile. 524 805 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi8g00012 875 Pfam Protein kinase domain 526 733 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi8g00012 875 Gene3D - 269 456 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi8g00012 Sebi-Chr8 608141 680265 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi8g00012 26 841 Receptor kinase-like Gene Family AT1G53420 54.435 0.0 889
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi8g00012 Pkinase 7.7e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi8g00012 - - gmx:100791136 1268.06