Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi8g00010 ATGTCCCTAGAGAAGGTAGTAGCTTTTGCTATTGATATTTGTCGTGGAATGGAGTATATACACGCACAAGGCATCATTCATCGAGACCTTAAACCGGAGAATGTCCTTATTGATGGGGAATCTAACCTCAAAATTGCTGATTTTGGCATTGCTTGTGAGACTGCAAAGTATGACTCATTGAGTGGTACCTACCGTTGGATGGCACCAGAGATGATCAAAGGCAAACGTTATGGGAGAAAGGTAGCTGTTGCAGTGGCACATAAGAATTCAAGGCCTGTTATTCCTTTCAATTACTGCCCAACTATTTTGAAAGATTTGATTAAGCAATGTTGGGCCTTGGAGCCCAAAAAGAGGCCCGAGTTCAGGCGGGTTGTTCAAGTTTTGGAGCAGATTGAACAATCTTTACGTATTCGCTATTCCAGGAACCCTGAATCCGGTGCAAAAATCTTGTAG 453 0.4283 MSLEKVVAFAIDICRGMEYIHAQGIIHRDLKPENVLIDGESNLKIADFGIACETAKYDSLSGTYRWMAPEMIKGKRYGRKVAVAVAHKNSRPVIPFNYCPTILKDLIKQCWALEPKKRPEFRRVVQVLEQIEQSLRIRYSRNPESGAKIL 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi8g00010 150 Gene3D Transferase(Phosphotransferase) domain 1 82 147 - -
Sebi8g00010 150 Pfam Protein tyrosine and serine/threonine kinase 90 128 IPR001245 GO:0004672|GO:0006468
Sebi8g00010 150 Pfam Protein kinase domain 4 82 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi8g00010 150 ProSitePatterns Serine/Threonine protein kinases active-site signature. 25 37 IPR008271 GO:0004672|GO:0006468
Sebi8g00010 150 ProSiteProfiles Protein kinase domain profile. 1 135 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi8g00010 150 SMART serkin_6 1 131 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi8g00010 150 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 2 134 - -
Sebi8g00010 150 SUPERFAMILY Protein kinase-like (PK-like) 2 140 IPR011009 -
Sebi8g00010 150 Gene3D Transferase(Phosphotransferase) domain 1 1 81 - -
Sebi8g00010 150 PRINTS Tyrosine kinase catalytic domain signature 19 37 IPR001245 GO:0004672|GO:0006468
Sebi8g00010 150 PRINTS Tyrosine kinase catalytic domain signature 99 121 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi8g00010 Sebi-Chr8 541298 541831 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi8g00010 1 135 MAP Kinase Kinase Kinase AT5G58950 53.939 2.95e-49 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Sebi8g00010 Pkinase 2.5e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi8g00010 - - gmx:100814245 201.445