Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi8g00008 ATGGCTGATTCTGATCTATATGAGACTGCTCGTGTTTCCCCCATTTCTCTGACTTATTACGGATTTTGTCTAGAAAATGGAGAGTACACAGTTAAACTCTACTTTGCAGAGATAATGTTCACTGATGATGACACGTTTAGTAGCCTTGGGAGACGTATATTTGATATCTACATACAGGGAGAGCCAGTAGAAAGGGATTTCAATATTGCAAATGAAGCCCAAGGAGTTGGAAAGGAAAAAATAATGCAATTTCCAGCTTATGTAAGTAATAATTCATTAGAGATCCGCTTCCATTGGGCTGGGAAAGGAACAAGAGCTATCCCATATCCATCAGTATATGGCCCTCTTGTATCAGCTATATCTGTCAGTCGTGACTCTAGAGGTAGTGGCATATCTGCAGGGGCTATTGTTGGAATAGTGGTTGCAGCTGTTTTTATTGTCATCCTAGTTATACTTTGGTGGGGAGGTTGCATAGGAATAAAGAGTTCATTAACTAAAGCAGAACTAAAGGACTTGGATCGACAAACTGGTTTATTTACCTTACGTCAAATCAAAACAGCAACAAATAACTTCAATATTTCCAATAAAATTGGAGAAGGAGGCTTTGGTCCTGTTTATAAGGGCATTTTGTCAGATGGCACAATTATAGCAGTCAAGAAGCTTTCATCTAAATCAAAGCAAGGAAATCGTGAGTTCATAAATGAGATAGGCATGATTTCAGCTTTGCAACACCCTTGTCTTGTTAAACTTTATGGTTGTTGTGTTGAGGGAGATCAATTGTTACTGGTATATGAATATATGCAAAACAATAGTCTTGCACACGCTTTATTTGGTCGTGAAGAATCTTGTTTAAAATTGGATTGGCCAACAAGGCACAAGATCTGTGTTGGTATTGCAAGAGGATTGGCTTTCTTGCATGAAGAATCGAGATTGAAAATTGTTCATAGGGATATTAAGGCCACTAATGTGTTGTTAGACAAAGACCTAAACCCAAAGATATCGGATTTTGGTTTGGCTAAACTTGATGAGGAGGACAATACACATATAAGTACTCGAATAGCTGGGACCTATGGATATATGGCTCCAGAATATGCAATGCATGGTTATTTGACTGAGAAAGCAGATGTATATAGTTTTGGAATTGTTGCCCTGGAAATCGTTAGTGGAAAGAGCAACACCATCCACCGGGCAAAGGAAAAATCTTTGTATCTTCTTGATTGGGCACATTTATTGAAAGAGAAAGGTAACCTAATGGAGCTAGTTGATCATAAGTTGGGTTTAAATTTCAATGAAGAGGAGGTATTGGTGATGATCAATGTTGCTCTTTTATGCACCAATGCCACTTCAAACCTTAGGCCTAGTATGTCATTAGTGGTAAGCATGCTTGAAGGCAAAATTGTGGTTCCAGAATTTGTTTCAGATCCAAATGAGGTAATGGATGAAATGAAGTTAGAGGCAATGCGACAGTATTACCATGAAGCCGAAGAAAATAAGATAAATGAGACACAAACACAGAGTCAAAATTTATTAATGGATGGGCCATGGACTGCTTCATTTTCATCAGCTGCAGATCTTTATCCCGTCGACATTGGTTCTTCCTATTGGGAGAGAAGAAATTGA 1620 0.3833 MADSDLYETARVSPISLTYYGFCLENGEYTVKLYFAEIMFTDDDTFSSLGRRIFDIYIQGEPVERDFNIANEAQGVGKEKIMQFPAYVSNNSLEIRFHWAGKGTRAIPYPSVYGPLVSAISVSRDSRGSGISAGAIVGIVVAAVFIVILVILWWGGCIGIKSSLTKAELKDLDRQTGLFTLRQIKTATNNFNISNKIGEGGFGPVYKGILSDGTIIAVKKLSSKSKQGNREFINEIGMISALQHPCLVKLYGCCVEGDQLLLVYEYMQNNSLAHALFGREESCLKLDWPTRHKICVGIARGLAFLHEESRLKIVHRDIKATNVLLDKDLNPKISDFGLAKLDEEDNTHISTRIAGTYGYMAPEYAMHGYLTEKADVYSFGIVALEIVSGKSNTIHRAKEKSLYLLDWAHLLKEKGNLMELVDHKLGLNFNEEEVLVMINVALLCTNATSNLRPSMSLVVSMLEGKIVVPEFVSDPNEVMDEMKLEAMRQYYHEAEENKINETQTQSQNLLMDGPWTASFSSAADLYPVDIGSSYWERRN 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi8g00008 539 SMART serkin_6 191 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi8g00008 539 ProSitePatterns Serine/Threonine protein kinases active-site signature. 313 325 IPR008271 GO:0004672|GO:0006468
Sebi8g00008 539 Pfam Protein tyrosine and serine/threonine kinase 192 461 IPR001245 GO:0004672|GO:0006468
Sebi8g00008 539 Gene3D Phosphorylase Kinase; domain 1 159 266 - -
Sebi8g00008 539 SUPERFAMILY Protein kinase-like (PK-like) 174 483 IPR011009 -
Sebi8g00008 539 Gene3D Transferase(Phosphotransferase) domain 1 267 472 - -
Sebi8g00008 539 Gene3D - 1 126 - -
Sebi8g00008 539 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 160 266 - -
Sebi8g00008 539 Coils Coil 492 512 - -
Sebi8g00008 539 Pfam Malectin domain 2 120 IPR021720 -
Sebi8g00008 539 ProSiteProfiles Protein kinase domain profile. 191 472 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi8g00008 539 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 6 500 - -
Sebi8g00008 539 FunFam Putative LRR receptor-like serine/threonine-protein kinase 267 474 - -
Sebi8g00008 539 CDD STKc_IRAK 197 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi8g00008 Sebi-Chr8 206625 211480 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi8g00008 7 520 Receptor kinase-like Gene Family AT1G53430 62.193 0.0 643
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi8g00008 PK_Tyr_Ser-Thr 2.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi8g00008 - - gmx:100785451 841.262