Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi89g00064 ATGGGATGCTGTAATTGCTTTGGGTTCATTGGTAGATGGAACCGTCAAAGCGCTATGCCTGACATCAACCATAATCTCTCCCAGGAGCTGTTGCTGGATGATGACATTGAAGATGAAGAGCACTTGTATAATGATGAAGTTATTAACACCACTAGTGGAGATGAGAGTGAGGTGCAAACTCGTCCCAAGCGATCGGAGGAAATTTTGAACTTGAGAGTAGAGAAAGGCATGATTTGTAGGCAGTTTCCTGTTAAGGAGACTAATAAAGTTGTTCGCACAGAGGATGAAAATGGGAACAAGATGATAAATGAGTATATTCGTGAGTATAAGATTGGTTCCGGTAGTTATGGGAAAGTGGCTCTTTATCGAAGCTCTGTTGATGGAAAGCATTATGCTATTAAGGCCTTTCACAAGTCCCATTTATTGAAGCTTCGAGTTGCACCCTCAGAAACTGCCATGAGTGATGTTCTACGAGAGGTTTTCATTATGAAAATGCTGGAACATCCTAATATTGTCAATCTCATTGAGGTGATTGATGACCCAGAGTCGGATAACTTCTACATGGTACTTGAATATGTGGAAGGCAAGTGGGTTTGTGAGGGCTCAGGTCCCACTTGTGGTTTAGGTGAAGAGACTGCCAGGAGATACTTGCGTGATATTGTTTGTGGATTAACATATCTCCATGCTCATAATATAGTACATGGGGATATTAAACCTGATAATCTGTTGATTACTCGTCATGGTACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGATAATAATGATGTGCTTCGACGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTGTTACCTATCATGGCAAAGCTGCAGACACGTGGGCAGTAGGAGTTACTTTATACTGTATGATATTTGGTGAATACCCTTTTCTTGGTGACACACTTCAAGATACATATGACAAAATAGTGAATAATCCTTTAGTGCTCCCAAATGATATGAATCCGCGGTTGAAGAACTTAATAGAAGGCCTACTTTTCAAAGACCCGAGATTAAGGATGACATTGGGTGATGTTGCGGGGGATAGCTGGGTTATTGGAGATGATGGGCCAATTCCTGAGTACCTTTGTTGGTGCAAAAGGAAGAGCTTGGAGAGTGAAGACAATAATGAGAAGAGCAATATGCTTTCTTGA 1188 0.4167 MGCCNCFGFIGRWNRQSAMPDINHNLSQELLLDDDIEDEEHLYNDEVINTTSGDESEVQTRPKRSEEILNLRVEKGMICRQFPVKETNKVVRTEDENGNKMINEYIREYKIGSGSYGKVALYRSSVDGKHYAIKAFHKSHLLKLRVAPSETAMSDVLREVFIMKMLEHPNIVNLIEVIDDPESDNFYMVLEYVEGKWVCEGSGPTCGLGEETARRYLRDIVCGLTYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAFEDNNDVLRRSPGTPVFTAPECVTYHGKAADTWAVGVTLYCMIFGEYPFLGDTLQDTYDKIVNNPLVLPNDMNPRLKNLIEGLLFKDPRLRMTLGDVAGDSWVIGDDGPIPEYLCWCKRKSLESEDNNEKSNMLS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi89g00064 395 ProSitePatterns Protein kinases ATP-binding region signature. 111 134 IPR017441 GO:0005524
Sebi89g00064 395 SUPERFAMILY Protein kinase-like (PK-like) 96 375 IPR011009 -
Sebi89g00064 395 FunFam Serine/threonine-protein kinase Ssp1 99 201 - -
Sebi89g00064 395 Pfam Protein kinase domain 107 362 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi89g00064 395 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 50 366 - -
Sebi89g00064 395 Gene3D Transferase(Phosphotransferase) domain 1 204 369 - -
Sebi89g00064 395 ProSiteProfiles Protein kinase domain profile. 105 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi89g00064 395 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Sebi89g00064 395 Gene3D Phosphorylase Kinase; domain 1 99 201 - -
Sebi89g00064 395 SMART serkin_6 105 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi89g00064 395 CDD STKc_LKB1_CaMKK 111 363 - -
Sebi89g00064 395 FunFam Serine/threonine-protein kinase GRIK2 95 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi89g00064 Sebi-Chr89 1564977 1569327 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi89g00064 111 370 CBL-interacting serine-threonine protein kinases AT5G35410 33.460 4.83e-42 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Sebi89g00064 Pkinase 1e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi89g00064 K00908 - gmx:100789178 674.47