Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi89g00050 ATGGCTCTCTCTCCCAAAGAAAATCAATCTTTCTTATTCATCCTTCTCCACCATTGTTGTCGCTTCTGGAGCTTCAGTCCCCCATACCCGTTGCTTCTTTCATATGGCTTCTCCTATTGGCTATCTTCTTCAGATATAAAGCTTCTTCAGACAACACCAAAAGCTGATATTGTGGTGGCTCAAGATGGCACTGGGAATTATAAGACCATATCAGAAGGTGTGGCTGCAGCTGCAGCTGCTAAGCTTAGTGGAAAAGGGGGAGTTGTTATTCACGTCAAAGCAGGTGTTTATAAAGAGAGTGTTGACATTAAGAGGTCAATAAAGAACTCGATGATCATTGGAGATGGGATGGGTTCCACTATTGTTATTGGCAATAATAACGCACAAGATGGCTCCATTGCGTTTCGTTCAGACACTTTCGGGAATGAAGAAGAAATACTTGTTACGGGAATGAAGCTCCTGAGGAAGCCAATAATGGTGAACTAA 486 0.4259 MALSPKENQSFLFILLHHCCRFWSFSPPYPLLLSYGFSYWLSSSDIKLLQTTPKADIVVAQDGTGNYKTISEGVAAAAAAKLSGKGGVVIHVKAGVYKESVDIKRSIKNSMIIGDGMGSTIVIGNNNAQDGSIAFRSDTFGNEEEILVTGMKLLRKPIMVN 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi89g00050 161 SUPERFAMILY Pectin lyase-like 51 141 IPR011050 -
Sebi89g00050 161 Pfam Pectinesterase 56 146 IPR000070 GO:0030599|GO:0042545
Sebi89g00050 161 Gene3D - 50 151 IPR012334 -
Sebi89g00050 161 ProSitePatterns Pectinesterase signature 1. 84 103 IPR018040 -
Sebi89g00050 161 PANTHER PECTINESTERASE 39 142 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi89g00050 Sebi-Chr89 1376652 1377406 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi89g00050 37 141 Carbohydrate Esterase AT1G23200 56.881 9.34e-30 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi89g00050 - - gmx:100816802 163.696