Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi89g00035 ATGGAAATTGATCTGAACCATGAAGTGATTGAGGCTGAGAAGAATGCACTCTGTGACAAAGAATGTGAGAAAGGTGCTTGTGTTTGTTGTTTATCCTCTCCAACCTGTTCATCTTCTAGTTCCTCTTCACCTTGTGTGTCTTCTTCTTATCTTGAGCTTTGGCACGCTTGTGCTGGCCCTCTCACCTCTTTGCCTAAGAAAGGAAATGTGGTGGTCTATTTTCCACAAGGTCACTTAGAACAAGTTGCCTCTTTCTCTCCTTTCTCACCAATGGAGATGCCCACCTATGATCTTCAGCCACAGATCTTTTGTAAGGTTGTCAATGTCCAACTACTTGCCAATAAGGAGAATGATGAGGTATATACACAAGTTACTTTGCTACCTCAGGCTGAGTTGGGAGGGATGCATTTGGAAGGCAAAGAAGTTGAGAAATTGGGAGGAGATGAGGAAGGAGATGGAGGATCAGCTACAAAATCAACCCCTCATATGTTCTGCAAAACACTGACTGCCTCTGATACTAGTACTCACGGGGGGTTCTCTGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAACAGAGACCCTCTCAAGAGCTCGTTGCCAAAGACCTGCATGGTGTGGAGTGGAAATTTCGTCATATTTATAGAGGTCAGCCAAGGCGGCATCTACTCACTACTGGCTGGAGTGTTTTTGTAAGCCAAAAGAGTCTGGTTTCTGGTGATGCAGTGCTCTTTCTCAGGGGTGAAAATGGAGAACTGAGATTGGGAATCAGAAGAGCTGTTCGACCTAGAAATGGTCTTCCCGAAACAATTGTTGGTAACCGGAACTGTTATCCCAATATTCTTTCTTCTGTGGCAAATGCTATATCCACCAAAAGCATGTTTCATGTTTTCTACAGTCCAAGAGCAAGTCATGCAGATTTTGTTATTCCCTACCAAAAGTATATTAAAAGCATCAAGAATCCAGTGAGCATTGGGACAAGATTCAAAATGAGGTTTGAAATGGATGAATCTCCAGAAAGAAGGTGTAATAGTGGTATGTTGATTGGAACGAGTGATTTGGATCCATATAGATGGCCTAAATCAAAATGGAGGTGCTTGATGGTTAGATGGGATGAGGATGTTGAGCCTAATCATCAAGACCGAGTATCTCCATGGGAGATTGATCCTTCTGCTCCTCTGCCTCCCTTGAGTATTCAGTCTTCCCCAAGACTGAAGAAACTGAGGACAGGTCTGCAGGTTTCCTCACCAAGTCACCTCATCACTGGAGGCAGTGGAATGATGGGCTTTGAGGAGTCTATAAGATCACCCAAGGTCTTGCAAGGTCAAGAAAATGCAGGTTTTGTGTCACTCTACTATGGATGTGACACAGTAACCAACCGGCCAGGTTTTGAGATGAGCTCTCCAAGTCATCCAAATCTTGCATCAACTGGAGTAGGAAAGGTCACCTCTGCTGAGCTTATGAGTGTTCACCCTTTCAGTTATGCAGGCTTTATGGAAACCAATAGGTTTCCGGGGGTCTTGCAAGGTCAAGAAATATGTCCTTTGAAATCCCTGACAGGAAAGGTTGATTTGAACCTTGGTGCTTGGGGAAAACCCAATGTTACTTTCAACCTTCATCAGGCAACCAAACCCAACTTTCAATCTGCATATTTTCCTTATGGGGATATTCACAAAGCTGGTCAAGCTAGCATCTTTTGCTCAAAACCCACAAGTTTCCACAGAGAGAATGTCTCATTTAACACACCAACCACTCAGGCAGGGATCATTAGAAATGAAGTTGGACTATCAGATCTCCCAAATGAGCACAAGCTGCAGGACAATATTTCTGCTGCTGCTTCATTAGGGGCTTCTAATATGAGGATTCCAAATGATAACAATGCCAAAGGAAAGGTAAATGCCTGCAAACTATTTGGGTTTCCTTTGTCTGGGGAAACTAGTACCCAAAATTTACAGAACCCTGCTAAAAGGAGTTGCACAAAGGTTCACAAGCAAGGAAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTAAACAGTTACGATGATCTGCTGAGTGAACTAGAGAGACTATTTGGCATGGAAGGCCTTCTAAGAGATCCTGATAAAGGATGGAGGATCCTGTACACTGACAGTGAGAATGACATAATGGTTGTGGGGGATGACCCATGGCATGAGTTTTGTGATGTGGTGTCCAAGATCCATATATATACCAAAGAAGAAGTGGAGAAGATGACAATTGGGATGATCAATGATGATACCAATAGCTGTTTGGAACAGACACCAATGATTATGGAGGCTTCAAAGTCTTCTTCAGTGGGTCAGCCAGATTATTCTCCAACTGCAGTTAGAGTCTAA 2373 0.4336 MEIDLNHEVIEAEKNALCDKECEKGACVCCLSSPTCSSSSSSSPCVSSSYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQVASFSPFSPMEMPTYDLQPQIFCKVVNVQLLANKENDEVYTQVTLLPQAELGGMHLEGKEVEKLGGDEEGDGGSATKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSVFVSQKSLVSGDAVLFLRGENGELRLGIRRAVRPRNGLPETIVGNRNCYPNILSSVANAISTKSMFHVFYSPRASHADFVIPYQKYIKSIKNPVSIGTRFKMRFEMDESPERRCNSGMLIGTSDLDPYRWPKSKWRCLMVRWDEDVEPNHQDRVSPWEIDPSAPLPPLSIQSSPRLKKLRTGLQVSSPSHLITGGSGMMGFEESIRSPKVLQGQENAGFVSLYYGCDTVTNRPGFEMSSPSHPNLASTGVGKVTSAELMSVHPFSYAGFMETNRFPGVLQGQEICPLKSLTGKVDLNLGAWGKPNVTFNLHQATKPNFQSAYFPYGDIHKAGQASIFCSKPTSFHRENVSFNTPTTQAGIIRNEVGLSDLPNEHKLQDNISAAASLGASNMRIPNDNNAKGKVNACKLFGFPLSGETSTQNLQNPAKRSCTKVHKQGSLVGRAIDLSRLNSYDDLLSELERLFGMEGLLRDPDKGWRILYTDSENDIMVVGDDPWHEFCDVVSKIHIYTKEEVEKMTIGMINDDTNSCLEQTPMIMEASKSSSVGQPDYSPTAVRV 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi89g00035 790 Gene3D - 327 398 - -
Sebi89g00035 790 SUPERFAMILY DNA-binding pseudobarrel domain 157 272 IPR015300 -
Sebi89g00035 790 Pfam B3 DNA binding domain 164 265 IPR003340 GO:0003677
Sebi89g00035 790 FunFam Auxin response factor 162 266 - -
Sebi89g00035 790 Gene3D - 658 751 - -
Sebi89g00035 790 CDD B3_DNA 162 264 IPR003340 GO:0003677
Sebi89g00035 790 SUPERFAMILY CAD & PB1 domains 665 741 - -
Sebi89g00035 790 ProSiteProfiles PB1 domain profile. 662 744 IPR000270 GO:0005515
Sebi89g00035 790 Pfam AUX/IAA family 655 746 IPR033389 -
Sebi89g00035 790 FunFam Auxin response factor 657 751 - -
Sebi89g00035 790 Gene3D - 162 266 IPR015300 -
Sebi89g00035 790 ProSiteProfiles B3 DNA-binding domain profile. 164 266 IPR003340 GO:0003677
Sebi89g00035 790 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 49 751 IPR044835 GO:0003677|GO:0006355|GO:0009725
Sebi89g00035 790 FunFam Auxin response factor 327 400 - -
Sebi89g00035 790 SMART B3_2 164 266 IPR003340 GO:0003677
Sebi89g00035 790 Pfam Auxin response factor 290 372 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi89g00035 Sebi-Chr89 581600 586758 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi89g00035 46 790 B3 DNA Binding Superfamily AT5G60450 61.992 0.0 871
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Sebi89g00035 AUX_IAA 4.5e-07 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi89g00035 - - gmx:100783513 1360.51