Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi89g00032 ATGTGGGCTAAGAAGAATGTTGTTGGGAAAGAACAGGTGGCAAAATTAGTGGATGATACATATAGGAAAATGCAGATATCCGGGGCCACTGATCTAGCATCAAAGGGACAAGGTGCATCAGATAGTAGTAATGTGAAGGTTAAAGGTGAAATTGATGATTCCTTTCAATCAGATCCAAAGATAAAGATTCGCTGTCTCTGTGGAAGTTCATTGGAAACAGAGGATTTGGTCAAGTGTGATGATCCAAGATGCCAAATGTGGCAACACATCAGCTGTGTTATTATTCCAGAGAAGCCTATGGAAGGCACCCCACCAGTTCCTGATAAATTTTATTGTGAAATCTGTCGACTCAATCGTGCAGACCCGTTTTGGGTTTCGGTGGCGCATCCTTTGCTTCCTGTGAAGTTGACCACAACCAGTATGCCAACTGACGGGATGCAATGGCCACAGTATACAGACCTACAGGTCAATGGTGTTCCTGTTCGTGCAATTAACAGACCTGGTTCACAATTGCTTGGGGCTAATGGTCGTGATGATGGTCCAATTATCACACCATATACAAAAGACGGAATTAATAAGATTTCCTTAACAGTATGTGATGCCCGCATCTTTTGTTTAGGGGTCCGCATTGTTAAAAGGCGCAACATGCAACAGATCCTAAACTTAATTCCAAAGGAGTCTGACGGTGAGCGTTTTGAAGATGCTCTTGCACGCGTTTGTCGCTGTGTTGGGGGCGGAAATGCAGCTGACAATGCTGATAGTGACAGTGATTTAGAAGTGGTTTCAGATACTTTTAGCGTTAATCTTCGTTGTCCGATGAGTGGTTCAAGAATGAAAATTGCTGGAAGATTCAAACCTTGTATTCACATGGGTTGTTTTGATCTTGAAGTTTTTGTGGAAATGAATCAACGGTCAAGAAAGTGGCAATGTCCTATATGTCTCAAAAACTATTCACTGGAGAATATTGTCATTGACCCGTATTTCAATCGCATCACGTCTATGATGATAAATTGTGGTGAAGATGTTACAGAGGTTGAGGTGAAGCCTGATGGTTCTTGGCGTGTTAAGGCAAAGAGTGAAAGTGAACGCCTGGATTTAGGGGATCTTGCACAATGGCACTTTCCTGATGGATCCCTCTGTGTTTCTACTGGTGGAGATGTCAAAAGAGTAGAAACATTGAAGCAGGTCAAACAGGAAGGTGTTTCTGACAGTCCTAATGGTTTAAAACTTGGCATCAGAAAGAATCGCAATGGAGTTTGGGAAGTCAGTAAACCCGAGGACACAAACACCTCTTCTGGTAATAAATTAAAAGAGATTTTTGGCAATCCTGAACAGGTTGTTATTCCGATGAGCAGCAGCGCCACTGGAAGTGGCAGGGATGGTGATGATCCTAGTGTAAACCAGGGTGGTGGTGGGCATATTGATTTTTCTACTACCAATGGGATTGAGATGGATTCGCTGGGTCTCAATAATGTTGATTTAACATATGGATATACTGCACATAACACTTCCGCTCAGGTGGGTGGTGCAGAAGTAATTGTTCTTAGTGATTCTGAAGAAGACAATGATATATTGTTATCTCCTGCAATTGCATATAAGAACAACCAAAATGATACTGCAGATGGTTACTCCATGCCACCGCCTGGACTTGTTAATTCATATACTGAAGATCAGAATCTTGGTGGAAATTCATGCTTGGGGCTTTTTCCTAATGAAGATGATTTTGGGATGTCTTCCCTGTGGTCGTTGCCTCCTGGAACTCAGGCAGGTCCAGGATTCCAATTATTTGGTTCTGATGCAGATGTGTCAGATGCATTGGTCCATTTGCAACATGGTCCTATTAATTGCACATCATCACTTAATGGTTATGCATTGGCTCCAGATACTGCTTTGGGATCGAGTAGTCTCTTACAAGATCCCTCTAATGGTCGCTCAGATGCTGACTTAAATGGTGGTTTGGTTGACAACCCATTGGCATTTGCTGGAGATGATCCCTCACTTCAGATTTTTCTCCCCACAAGACCAGCTGAGTCATCTGTGCAGAATGAATTGAGAGATCAGGCAAATGTGTCTAATGGTGTCTGCACTGAGGATTGGATATCCCTTAGTCTTGGAGGTGGTGCTGGTAGCAGTAATGGTGATGCTTCCACTCAAAATGGATTGAATTCTAGACATCAAATCCCAGCCAGAGATGGTGCCACAAATTCTTTGGCTGATACTGCTTCTTTGCTCCTTGGTATGAATGACGGTAGATCTGACAAAGCAAGTAGGCAAAGATCAGATAGCCCTTTCTCATTTCCTCGCCAAAAACGTTCTGTAAGGCCCCGCTTATACCTTTCTATTGATTCAGATTCAGAGTAA 2361 0.4282 MWAKKNVVGKEQVAKLVDDTYRKMQISGATDLASKGQGASDSSNVKVKGEIDDSFQSDPKIKIRCLCGSSLETEDLVKCDDPRCQMWQHISCVIIPEKPMEGTPPVPDKFYCEICRLNRADPFWVSVAHPLLPVKLTTTSMPTDGMQWPQYTDLQVNGVPVRAINRPGSQLLGANGRDDGPIITPYTKDGINKISLTVCDARIFCLGVRIVKRRNMQQILNLIPKESDGERFEDALARVCRCVGGGNAADNADSDSDLEVVSDTFSVNLRCPMSGSRMKIAGRFKPCIHMGCFDLEVFVEMNQRSRKWQCPICLKNYSLENIVIDPYFNRITSMMINCGEDVTEVEVKPDGSWRVKAKSESERLDLGDLAQWHFPDGSLCVSTGGDVKRVETLKQVKQEGVSDSPNGLKLGIRKNRNGVWEVSKPEDTNTSSGNKLKEIFGNPEQVVIPMSSSATGSGRDGDDPSVNQGGGGHIDFSTTNGIEMDSLGLNNVDLTYGYTAHNTSAQVGGAEVIVLSDSEEDNDILLSPAIAYKNNQNDTADGYSMPPPGLVNSYTEDQNLGGNSCLGLFPNEDDFGMSSLWSLPPGTQAGPGFQLFGSDADVSDALVHLQHGPINCTSSLNGYALAPDTALGSSSLLQDPSNGRSDADLNGGLVDNPLAFAGDDPSLQIFLPTRPAESSVQNELRDQANVSNGVCTEDWISLSLGGGAGSSNGDASTQNGLNSRHQIPARDGATNSLADTASLLLGMNDGRSDKASRQRSDSPFSFPRQKRSVRPRLYLSIDSDSE 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi89g00032 786 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 1 577 - -
Sebi89g00032 786 Pfam PHD-finger 64 116 IPR019787 -
Sebi89g00032 786 ProSitePatterns Zinc finger PHD-type signature. 65 115 IPR019786 -
Sebi89g00032 786 Pfam MIZ/SP-RING zinc finger 267 315 IPR004181 GO:0008270
Sebi89g00032 786 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 245 355 IPR013083 -
Sebi89g00032 786 MobiDBLite consensus disorder prediction 708 733 - -
Sebi89g00032 786 ProSiteProfiles Zinc finger SP-RING-type profile. 254 337 IPR004181 GO:0008270
Sebi89g00032 786 MobiDBLite consensus disorder prediction 422 474 - -
Sebi89g00032 786 MobiDBLite consensus disorder prediction 747 786 - -
Sebi89g00032 786 SMART PHD_3 64 116 IPR001965 -
Sebi89g00032 786 CDD PHD_Bye1p_SIZ1_like 64 115 - -
Sebi89g00032 786 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 47 123 IPR013083 -
Sebi89g00032 786 SUPERFAMILY FYVE/PHD zinc finger 55 119 IPR011011 -
Sebi89g00032 786 CDD SP-RING_Siz-like 268 317 IPR031141 -
Sebi89g00032 786 MobiDBLite consensus disorder prediction 446 462 - -
Sebi89g00032 786 FunFam E3 SUMO-protein ligase SIZ2 241 355 - -
Sebi89g00032 786 MobiDBLite consensus disorder prediction 422 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi89g00032 Sebi-Chr89 506015 512917 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Sebi89g00032 PHD 4.9e-07 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi89g00032 - - gmx:100793735 1374.38