Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi896g00002 ATGGCTGAGTTTCCCACTTTCGTCCATTCTGTAAAGGATATCACTCCTATTATTGATTCATGGAACCTAAGGGTTAAAGTTCTCAGAATGTGGCGTGCACCTGATGTTTATAACCCCTCTGAATTTGTTTGCCTAGATATTATTCTCATTGACTCCGAGGGTACGAAGATTGAAGCTTGTCTTCCCAATGCTCTCCTCAATACTTTTCGTTTTGACTTGGTGGAGGATAGGTTCTATCGGCTGATGTATTTTTCTGTCCTCCCAAATGTTGGTCCATATAAAACAACTCCGCATAGATACAAGCTACTTTTTTTGAAAAAAACTATGATTGCTTCGGATATGCCATTTTCAACTGTGCCATACTCCTTCTCTCCTGTGACTGCTGATGAAATAATAAAGAAAGGGGAACAATTTGATTATATGATAGATTTTGTTGGAGTGTTAACATCAATGTCTGCTGAGGAACACAGCGTGCTGTTTGGTGTTATGAAGAGATCTATCTTCCTTGAAATCCATGACCACACGGGAAAGATTCAATGTGTCCTTTATGATGAGTACGTTGATTTGGTTCAAAATCATGTTAAGGTTCACGGTCGAGCAAGTCCTATTATAGTGATTCAGTTTGCTAAGCTAAGTCCAGTTGGAGGGGCATCTAACATACAGAACATGTTCAGTGCAACAAGGGTGTTGTTTAACCCTGTGCTTCCAGAGGTTGTTGAATTTAGGAGGAGTGCTGCCTTGCTTGGCATTGAGCTGGAGGGGCGAATTGGATTTATGAAAAGGATAACATCTTATGTATCAGTTAAAGATGATTTCTTTAATTTGCATCCACCAAAGAAAATTATTGAGCTTCGTAGTTCCCCACAGACTGGATTCTTTATTGTGTGTGAGAAGGTTGTCAAGATTGTGAATGATAGTAGGTGGTGGTTTCTAGAATGTAAATGCCGAAATCCAGTGATTCCTAATGAAGGGATTTATTTTTGCTCTGAATGTCGTAGGAACGTTGTGACTGTTATTCCCCGTTACCGACTTAAGATTGAGGTCTATGATTCAAGTGACAGTACCCATGTCATTTTGGATGATTCTGATGCTGAACGTTTGTTGAATAAGTCCTGCAAATCTCTCATGGATGAAGTTGAAGGGGCGCGTGAAATTGATTTTATTCCTTTGGTTCGTGGTGTGAAGGAAGAAACCTGCACTGGCAGTTCTCGAGTTTGTCCTGTTCAGTGA 1230 0.4016 MAEFPTFVHSVKDITPIIDSWNLRVKVLRMWRAPDVYNPSEFVCLDIILIDSEGTKIEACLPNALLNTFRFDLVEDRFYRLMYFSVLPNVGPYKTTPHRYKLLFLKKTMIASDMPFSTVPYSFSPVTADEIIKKGEQFDYMIDFVGVLTSMSAEEHSVLFGVMKRSIFLEIHDHTGKIQCVLYDEYVDLVQNHVKVHGRASPIIVIQFAKLSPVGGASNIQNMFSATRVLFNPVLPEVVEFRRSAALLGIELEGRIGFMKRITSYVSVKDDFFNLHPPKKIIELRSSPQTGFFIVCEKVVKIVNDSRWWFLECKCRNPVIPNEGIYFCSECRRNVVTVIPRYRLKIEVYDSSDSTHVILDDSDAERLLNKSCKSLMDEVEGAREIDFIPLVRGVKEETCTGSSRVCPVQ 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi896g00002 409 SUPERFAMILY Nucleic acid-binding proteins 125 245 IPR012340 -
Sebi896g00002 409 PANTHER OS03G0429900 PROTEIN 11 387 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi896g00002 409 Gene3D - 275 404 IPR012340 -
Sebi896g00002 409 CDD RPA1_DBD_B_like 143 244 - -
Sebi896g00002 409 Gene3D - 7 112 IPR012340 -
Sebi896g00002 409 SUPERFAMILY Nucleic acid-binding proteins 287 385 IPR012340 -
Sebi896g00002 409 Gene3D - 119 249 IPR012340 -
Sebi896g00002 409 Pfam Replication factor-A C terminal domain 295 385 IPR013955 -
Sebi896g00002 409 Pfam Domain of unknown function DUF223 47 134 IPR003871 -
Sebi896g00002 409 SUPERFAMILY Nucleic acid-binding proteins 9 119 IPR012340 -
Sebi896g00002 409 CDD RPA1_DBD_A_like 23 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi896g00002 Sebi-Chr896 7628 10606 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi896g00002 8 377 Core DNA Replication Machinery Family AT5G08020 24.121 7.24e-15 74.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi896g00002 - - lja:Lj1g3v3385890.1 237.654