Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi896g00001 GGGGGTAAGATACAAGCCTCAATTCGGAAGCCTATGATGAAGAAATTTAAGAATGCTATCGTGGAGGGTGGGGTTTACACCATGATCAATTTTGGTGTCATAAGGAGTGCTGGTAATTACCGTGCAGCAAAACATGAATATAAGTTGTTGTTCAGTGGAAAGACACGACTATTTCCAGCTCAGACTGAGTTGATCCCTCTTAATGGACTTTCCCTTGTGAATACGGAGGATGTGTTCAAGACTAATGGGGATTCCAACTATCTCATAGACTTGGTGGGACTTCTCACAGCTGTTTCTGGTGAGAAAGAACTCATAACGGAAGGCAGGAAGACAAGGATGATACAACTTGAACTGACTGACGAGAAGGGTAAGCTACAGTGCACTGTGTTTGGTGATTATGTTGATGCTGTCAAGGAACATCTATCAGCTGGTATTAGCCCTCTGCCTGTTTTGGTGGTCCAGTTTTTTAAAGTCAGGCTTTACAAGGGATGTGTTGTGATCCAGAACGTTAACAACACTTCTAGAATTCTATGGAATGCGAAGATTACAAAAGTGAATGACTTTAGGAATCGGCTTGCAAGCAATGGAATTGATCCTACTATTCCTATGGGAGATTTACTGGTGGGTAGTCCAATTATCCCACTTGCTGACGATTTTCTGAAACTTTATCCGAGGAAGACTCCAGAACAACTCCAATTGACAGAGGAGGATGGAACATTTATTGTACTAGCCACTATCATTGGAATTATTAAGGATGAGCAGTGGTGGTATGGAGCTTGCAAGTGTCACAAGGCTGTGACCCCTAATGGAGGTCTATACTATTGCTCAAATTGTTGCACTCACGTGGTGGAAGTTACTCCAAGGTTTAAGGTGAAGGTGGAGGTATGCCATTGGGATGAAAGTGCTGTATTTGTTCTATTTGACTCTGATGTAGCTCAATTGTTAGGCAAGTCGTGTAAGGAGTTACTTGCGGAGGCAAAGGATATCAAATCAGTTGTCCACCCCCCTGAGTTTGTCAAATTGATTGGGAAAGCAATGTTGTTCAAGGTTGAGAAGGGTCCTGAATATGCATTTAGTTATGATGACTCATTCAAAGTAAAGAAAGTATGTGATGATTCTCAAATAATTACCAAATTCAAGGACATGTGGGGAATAACAACTCCTAAGAAGCTGAAGTTTGATCCTCCTTTTCCTACTACGGTTGAAGGTGACAATCTGCAATGTGCATGTGAAACCTCAGCAGAAGATTTTGAGGTGTTGGTTGATACCCGTGTGGCATCTGACCCAGCTTTTGAGGCTTCGTCAAGCTCAGGTGCTCAGGCTCAGGACCCAATCTATGAGCTTACCCCTAATGGAGAGGGCGATGGGGCTAGCCCTGTGCTGAAAAAAATGAGGAGGAAGGTTGTTAAGGTTGAGAAAGAGTAA 1425 0.4288 GGKIQASIRKPMMKKFKNAIVEGGVYTMINFGVIRSAGNYRAAKHEYKLLFSGKTRLFPAQTELIPLNGLSLVNTEDVFKTNGDSNYLIDLVGLLTAVSGEKELITEGRKTRMIQLELTDEKGKLQCTVFGDYVDAVKEHLSAGISPLPVLVVQFFKVRLYKGCVVIQNVNNTSRILWNAKITKVNDFRNRLASNGIDPTIPMGDLLVGSPIIPLADDFLKLYPRKTPEQLQLTEEDGTFIVLATIIGIIKDEQWWYGACKCHKAVTPNGGLYYCSNCCTHVVEVTPRFKVKVEVCHWDESAVFVLFDSDVAQLLGKSCKELLAEAKDIKSVVHPPEFVKLIGKAMLFKVEKGPEYAFSYDDSFKVKKVCDDSQIITKFKDMWGITTPKKLKFDPPFPTTVEGDNLQCACETSAEDFEVLVDTRVASDPAFEASSSSGAQAQDPIYELTPNGEGDGASPVLKKMRRKVVKVEKE 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi896g00001 474 CDD RPA1_DBD_A_like 1 56 - -
Sebi896g00001 474 Gene3D - 65 199 IPR012340 -
Sebi896g00001 474 CDD RPA1_DBD_C 229 369 IPR047192 -
Sebi896g00001 474 Gene3D - 1 59 IPR012340 -
Sebi896g00001 474 MobiDBLite consensus disorder prediction 431 461 - -
Sebi896g00001 474 Pfam Domain of unknown function DUF223 1 87 IPR003871 -
Sebi896g00001 474 SUPERFAMILY Nucleic acid-binding proteins 71 197 IPR012340 -
Sebi896g00001 474 Pfam Replication factor-A C terminal domain 242 327 IPR013955 -
Sebi896g00001 474 SUPERFAMILY Nucleic acid-binding proteins 2 59 IPR012340 -
Sebi896g00001 474 Gene3D - 221 375 IPR012340 -
Sebi896g00001 474 CDD RPA1_DBD_B_like 90 192 - -
Sebi896g00001 474 SUPERFAMILY Nucleic acid-binding proteins 229 352 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi896g00001 Sebi-Chr896 2279 4600 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi896g00001 1 331 Core DNA Replication Machinery Family AT5G08020 21.849 1.27e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi896g00001 - - lja:Lj1g3v3385890.1 378.252