Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi895g00013 ATGCATCAAGGTTGCTTTAATGTTCCTGGTTTGGATCTGAATGCGTCTGGACCCGATCGTGTGGGTCTGACTCCAGCGGGTTCATCGAGCATAAATCTGGCGTTGGCGGCGGAGCGACAACTCCCTGGACCTCCGGAGGAACAAGGTGTGGGAGGGTGGCAGAGTGAAGGGGATTCCGTGAGGGTGTCGCTGATGAGGCTGCTGGAGGAGGAAGGTGGGGACACGACGGCGGAGGAAGAGAAAGGAGTAGGGATGGTGGGGAATGATTCGGTGTGTTGCATGTGCATGGGGAGGAATAAAGGAGCAACATCCATACCATGTGGGCACACTTTTTGCAGTGTTGTATCTGTTTACCTTCACAAGCCTTTATGGTGGATCGCTAACCTGGTAGTGGTTGTTCCCGACGTTATTCAGAAGTAA 420 0.5333 MHQGCFNVPGLDLNASGPDRVGLTPAGSSSINLALAAERQLPGPPEEQGVGGWQSEGDSVRVSLMRLLEEEGGDTTAEEEKGVGMVGNDSVCCMCMGRNKGATSIPCGHTFCSVVSVYLHKPLWWIANLVVVVPDVIQK 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi895g00013 139 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 55 114 IPR013083 -
Sebi895g00013 139 SUPERFAMILY RING/U-box 85 113 - -
Sebi895g00013 139 PANTHER OS01G0917900 PROTEIN 35 115 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi895g00013 Sebi-Chr895 224481 225087 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi895g00013 34 124 C3H Transcription Factor Family AT4G22250 47.525 1.52e-16 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi895g00013 - - pvu:PHAVU_006G145000g 94.7449