Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi895g00004 ATGGCGGTTTTGTCTCTGAATTCACTGCCTTTAGGGTTCCGATTCCGACCTACAGATGAGGAACTCATCGATTACTACCTGCGACAGAAGATCAATGGCAATGGTGAAGAAGTTTGGGTTATCAGAGAAATTGATGTCTGCAAGTGGGAACCCTGGGATTTGCCTGATTTGTCAGTGATAAGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCACAGGACCGCAAGTATCCAAATGGGCATAGATTGAACAGAGCAACAAATCATGGGTATTGGAAGGCAACAGGCAAGGATCGTAAAATCAAGTCTGGGTCTATCTTGATTGGAATGAAGAAGACTTTAGTCTTCTATAATGGTCGTGCACCAAAAGGGAAGAGGACTAATTGGGTTATGCATGAGTATAGGCCTACCCTGAAGGAGCTTGATGGTACCAATCCTGGACAGAAACATGATGAGAGCCTTGAAGCTTCAAACTGTGATGAAGTAGAGCAGACTACTTCAACTCCTATGGCTGCCAATTACTCTCCAGAAGAAATACAATCTGATTCAGCTCTTATTGCAGTATCCCCATCACAGGTTACAGAAGATGATAAGCATCAAGCAATTATCCCCGAGATGTCTGAAGAAACAATATCCAACATTGTAACCCCGGTTGATTGCTATAGTGACAGATATGATGCTCAAAATCAAATTGTAAAACTACCTGCGGAGGAGGATCAGCCGTTGAACTTTGACATATTTGATGACCCAAGTTACGATCTCTTAGATGACAAATTATTTTCCCCAGTACTTGTGCATATTCCACAAGAATTTCATTATCAAGCAAACAATGAATCAGATGGTCGATGTGCACTTCAATATGGTACAAATGAACCAAATATTTCAGACCTTTTTAATTGGGAGCAACTCTCCTATGAGGAGCCTGGTTGTCAACAGCAGAACTTCCCCTTGTTTAATGTTAAGGATAGTGGATCGGGCAGTGACTCAGATGTGGAAGTAGCCAATATGACTTGTATGCAAGCTACTTATTCTGAGGCAATTGACAGAAGGATTCCTTTGGTGACAACACCAGAATTTTGCAGCACCATTGGAATCCCCTTTAACCATAGTGTTGATGAGCAGAAGATCAATGTTGGGTTATTTCAAAATAATGCCCAGATGGCTTTTTCATCTGATGTCAATATGGGCCAAGTGTACAATGTGGTCAATGATTATGAGCAACCAAGAAACTATAATATAGCTGCTGGTGGTGAAATTGGAATCATAAGAAGGCCTAGACTGGCACAAAATGAACATCTGAACACAAACTCAACGCAAGGTATTGCAAACAGGAGAATTCGTTTGTTAAAGAGAGCACATGGCTCAAATAGGATGGTGAAAGATCGGAGTTGTGCACAAGAAAAGCATAATTCAAAACCAGTCATTGCAGTGGACAAGAAAGCTTCAGATAATCATGTTGCAGATGAAAGTGCTAGTCTTACTAATTATGTGAATGAACTGCAGAAGACACCTGAGTCAACCAACATAGAAAGATTTCTCACAAGTTGCAAATGCAGTTTCTGCCTTTGTACTGCTCTTATTAGTGGTCTATACTAA 1596 0.4091 MAVLSLNSLPLGFRFRPTDEELIDYYLRQKINGNGEEVWVIREIDVCKWEPWDLPDLSVIRNKDPEWFFFCPQDRKYPNGHRLNRATNHGYWKATGKDRKIKSGSILIGMKKTLVFYNGRAPKGKRTNWVMHEYRPTLKELDGTNPGQKHDESLEASNCDEVEQTTSTPMAANYSPEEIQSDSALIAVSPSQVTEDDKHQAIIPEMSEETISNIVTPVDCYSDRYDAQNQIVKLPAEEDQPLNFDIFDDPSYDLLDDKLFSPVLVHIPQEFHYQANNESDGRCALQYGTNEPNISDLFNWEQLSYEEPGCQQQNFPLFNVKDSGSGSDSDVEVANMTCMQATYSEAIDRRIPLVTTPEFCSTIGIPFNHSVDEQKINVGLFQNNAQMAFSSDVNMGQVYNVVNDYEQPRNYNIAAGGEIGIIRRPRLAQNEHLNTNSTQGIANRRIRLLKRAHGSNRMVKDRSCAQEKHNSKPVIAVDKKASDNHVADESASLTNYVNELQKTPESTNIERFLTSCKCSFCLCTALISGLY 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi895g00004 531 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 8 164 - -
Sebi895g00004 531 SUPERFAMILY NAC domain 4 141 IPR036093 GO:0003677|GO:0006355
Sebi895g00004 531 MobiDBLite consensus disorder prediction 140 160 - -
Sebi895g00004 531 Gene3D NAC domain 18 164 IPR036093 GO:0003677|GO:0006355
Sebi895g00004 531 FunFam Nac domain-containing protein 86 18 154 - -
Sebi895g00004 531 MobiDBLite consensus disorder prediction 140 157 - -
Sebi895g00004 531 ProSiteProfiles NAC domain profile. 9 164 IPR003441 GO:0003677|GO:0006355
Sebi895g00004 531 Pfam No apical meristem (NAM) protein 10 135 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi895g00004 Sebi-Chr895 89563 93066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi895g00004 1 493 NAC Transcription Factor Family AT4G35580 38.196 7.55e-86 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Sebi895g00004 NAM 4.7e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi895g00004 - - gmx:100777071 729.554