Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi894g00018 ATGGGAAGACACTCTTGCTGCTATAAGCAGAAGTTAAGAAAAGGCCTCTGGTCTCCAGAGGAAGATGAGAAGCTTTTGAATTATATCACCAAACATGGTCATGGATGTTGGAGCTCTGTCCCAAAACTAGCTGGCTTGCAGAGGTGTGGGAAGAGCTGCAGGTTAAGGTGGATAAATTACCTGAGACCTGATTTGAAGAGAGGAGCATTCTCTCAGCAAGAAGAGAATTTGATCATTGAACTCCATGCAGTCCTTGGTAACAGGTGGTCTCAGATTGCAGCACAGTTACCAGGAAGAACTGACAATGAGATTAAGAATCTATGGAATTCCTGTCTCAAGAAGAAGCTGAGGCAAAGAGGCATTGACCCAAACACCCACAAACCACTCTCTGAGATTGAGAATGACATTAAGGAAAAGCCACCCATAGCTGACAAAAGCAATCAGAAAGCCTCAGTTGGATCCAATGAAGTGATGAGTTTGGTTGAGGCAGCAAATCCCAAACCAACTTCCATGCCTGCAGAGAGATACCCACTAGAAGTTTCTACTACCTCCAAGATCAACAACAGCAACAGTAGTAGCAGTAATTTGACCAGCACAACACCACCTACCCAGGAATTATTCCTAGATAGGTATGGTACCTGCCATGATAGTTCCATCACCACCAGTTGCAGACCATCTGATATGGCAGGATACTTTTCTTTCCAGCACTTGAACTATGGATCAAACATGGGACTCTCTCCAAATCCCAACACCTCTCTTTGTTTCATACCAAACACCACTTCTTCCCAAGTTATGTCAGACCTCAATTCTACCATAACCTCTACCATGCTCCATTCTGTGTCAAGCTCAATTTTCCCAACTCCAACACATGTAAAGTCCACCATTAGTACTCTCCAGTCTAATAACAATCCTTCTTCCATATCCTCTGATGGGGTTCACAACTGGGAAGCAAATAACTTCAGTAACAAAAGCAATGGGAACAGTAACAATATCCAGTTACAAAACAACACAAACTTCTTTGACAACAGCACTCTAACATGGGGGCTGGCAGAGTCTGTGAAGGTTAATAATAAAGACTCTCATCATGTACCCTTACAAACAGAACAAGAAGACATAAAATGGTCTGAATATCTCAACACCCCCCATTTCTTCTGGGAAACACAGTGCAGAATCAAACCTCTCAATCCATCTACAGTGAGGTTAAACCAGAAACAAGCTTCATAA 1224 0.4273 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEIENDIKEKPPIADKSNQKASVGSNEVMSLVEAANPKPTSMPAERYPLEVSTTSKINNSNSSSSNLTSTTPPTQELFLDRYGTCHDSSITTSCRPSDMAGYFSFQHLNYGSNMGLSPNPNTSLCFIPNTTSSQVMSDLNSTITSTMLHSVSSSIFPTPTHVKSTISTLQSNNNPSSISSDGVHNWEANNFSNKSNGNSNNIQLQNNTNFFDNSTLTWGLAESVKVNNKDSHHVPLQTEQEDIKWSEYLNTPHFFWETQCRIKPLNPSTVRLNQKQAS 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi894g00018 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Sebi894g00018 407 SMART sant 66 114 IPR001005 -
Sebi894g00018 407 SMART sant 13 63 IPR001005 -
Sebi894g00018 407 FunFam Myb transcription factor 11 67 - -
Sebi894g00018 407 CDD SANT 17 61 IPR001005 -
Sebi894g00018 407 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Sebi894g00018 407 FunFam MYB transcription factor 68 140 - -
Sebi894g00018 407 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sebi894g00018 407 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Sebi894g00018 407 Gene3D - 11 67 - -
Sebi894g00018 407 PANTHER MYB DOMAIN PROTEIN 55 1 346 - -
Sebi894g00018 407 Gene3D - 68 141 - -
Sebi894g00018 407 CDD SANT 69 109 IPR001005 -
Sebi894g00018 407 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Sebi894g00018 407 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sebi894g00018 407 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi894g00018 Sebi-Chr894 237916 239463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi894g00018 1 387 MYB Transcription Factor Family AT1G09540 49.742 4.01e-104 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi894g00018 Myb_DNA-binding 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi894g00018 K09422 - qsa:O6P43_007365 526.554