Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi894g00015 ATGGGTATTAAGGGTTTAACAAAGCTTTTAGCTGACAATGCCCCCAAAGCCATGAAGGAGAATAAATTCGAGAGCTACTTTGGCCGCAAGATCGCCGTTGACGCCAGCATGAGCATTTACCAGTTCCTTATTGTAGTGGGAAGAAGTGGAACTGAAACGCTAACTAATGAAGCCGGTGAAGTTACTAGTCATTTGCAAGGGATGTTTACGCGGACAATCAGACTTTTAGAAGCCGGGATGAAGCCAGTATATGTTTTTGATGGGAAGCCACCGGATTTGAAGAAACAAGAGCTGGCAAAACGTTACTCGAAGAGAGCTGAGGCTACTGAGGGCTTGTCAGAAGCCATAGAGGCTGACAATAAGGAAGATATTGAAAAGTACAGTAAACGGACAGTGAAGGTGACAAAGCAGCATAATGAAGACTGCAAAAGACTTTTAAGACTCATGGGAGTGCCTGTTGTTGAGGCACCCTCGGAAGCAGAGGCTCAGTGTGCTGCTCTCTGCAAAGCTGGAAAGGTTTATGCTGTAGCTTCTGAAGACATGGATTCTTTGACGTTTGGAGCTCCTAAATTTCTTCGCCATCTAATGGATCCTAGCTCGAAAAAAGTTCCAGTGATGGAATTTGATGTTGCAAAGATTTTGGAGGAGTTAAATCTGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGGTGTGATTATTGTGACAACATTCGAGGGATTGGGGGACAGACAGCTTTGAAGCTCATACGTCAACATGGCTCAATTGAAAATATACTGGAGAACATAAACAGAGAGAGGTACCAGATACCAGATGATTGGCCATATCAGGAGGCTCGGAGGCTTTTTAAAGAACCAATGGTCATAACTGAAGATGAGGAACTTAATCTCAAATGGTCTGGTCCAGATGAAGAAGGGTTAATGACATTTCTGGTAAATGAGAATGGGTTCAACAGTGATAGGGTGACAAAGGCAATAGAAAAAATTAAAGCGGCAAAGAACAAGTCATCACAAGGCCGATTGGAATCATTCTTTAAGCCAGCTGCAAATCCATCTGTACCTATCAAACGGAAGGAAACACCAGAGAATAATGCTAAAGAGACTAATAAAAAAACTAAGGCCGGTGGCGTTAGCATGGAGGATCAATTCGCAATACCGATGCCAGTCTTCCAAATTCTAACCATGAAGCTCGCAGACTCACTGCTTCTTGTGACTCTGGCTCTGCTCTTATCCACTGCTTTCTCATCAGATCCTGACCCTCTTCAAGACCTCTGTGTTGCCGACCTTTCCTCAGGTGTCAAAGTGAATGGATTCACTTGCAAGGAAGCATCCAAGGTAAACGCCTCTGATTTCTTCTCCAATATACTAGCCAAGCCAGGAGCCACCAACACCACTTTTGGCTCTGTGGTGACTGGAGCCAATGTTGAGAAAATCCCAGGACTTAACACTCTTGGTGTGTCTCTGTCAAGGATTGACTATGCCCCAGGGGAACTAGATGTTGGGTTTATAACCACATCCAATAAGCTCATATCAAAGACCATCAACAAGGGTGAGATATTTGTGTTCCCAAAAGGTTTAGTTCACTTCCAAAAGAACAATGGCAAGGTACCTGCTGCTGTGCTTTCAGCCTTCAATAGCCAACTTCCTGGTACACAGTCCATTGCTACTACTTTGTTTGCTGCCACACCCCCTGTTCCAGATCATGTGTTGACCATGACATTCCAAGTGGGCACCAAGGAGGTTGACAAAATCAAGTCTAGGCTGGCACCCAAGAAGTAA 1782 0.4416 MGIKGLTKLLADNAPKAMKENKFESYFGRKIAVDASMSIYQFLIVVGRSGTETLTNEAGEVTSHLQGMFTRTIRLLEAGMKPVYVFDGKPPDLKKQELAKRYSKRAEATEGLSEAIEADNKEDIEKYSKRTVKVTKQHNEDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFDVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINRERYQIPDDWPYQEARRLFKEPMVITEDEELNLKWSGPDEEGLMTFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPAANPSVPIKRKETPENNAKETNKKTKAGGVSMEDQFAIPMPVFQILTMKLADSLLLVTLALLLSTAFSSDPDPLQDLCVADLSSGVKVNGFTCKEASKVNASDFFSNILAKPGATNTTFGSVVTGANVEKIPGLNTLGVSLSRIDYAPGELDVGFITTSNKLISKTINKGEIFVFPKGLVHFQKNNGKVPAAVLSAFNSQLPGTQSIATTLFAATPPVPDHVLTMTFQVGTKEVDKIKSRLAPKK 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi894g00015 593 Gene3D - 2 218 - -
Sebi894g00015 593 SMART xpgn3 1 108 IPR006085 GO:0004518
Sebi894g00015 593 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Sebi894g00015 593 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Sebi894g00015 593 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Sebi894g00015 593 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Sebi894g00015 593 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Sebi894g00015 593 SUPERFAMILY RmlC-like cupins 448 588 IPR011051 -
Sebi894g00015 593 CDD PIN_FEN1 4 332 - -
Sebi894g00015 593 Gene3D Jelly Rolls 498 591 IPR014710 -
Sebi894g00015 593 Gene3D Jelly Rolls 417 497 IPR014710 -
Sebi894g00015 593 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Sebi894g00015 593 Pfam Cupin 497 582 IPR006045 -
Sebi894g00015 593 Pfam XPG N-terminal domain 1 108 IPR006085 GO:0004518
Sebi894g00015 593 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
Sebi894g00015 593 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 353 IPR036279 -
Sebi894g00015 593 CDD H3TH_FEN1-Euk 222 290 - -
Sebi894g00015 593 CDD cupin_OxOx 418 589 IPR001929 GO:0030145
Sebi894g00015 593 FunFam Flap endonuclease 1 219 286 - -
Sebi894g00015 593 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Sebi894g00015 593 SMART Cupin_1_3 454 583 IPR006045 -
Sebi894g00015 593 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 373 IPR006084 -
Sebi894g00015 593 MobiDBLite consensus disorder prediction 353 374 - -
Sebi894g00015 593 SMART xpgineu 147 219 IPR006086 GO:0004518
Sebi894g00015 593 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788
Sebi894g00015 593 SMART 53exo3 29 306 IPR002421 GO:0003677
Sebi894g00015 593 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Sebi894g00015 593 FunFam Flap endonuclease 1 10 222 - -
Sebi894g00015 593 Gene3D - 219 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi894g00015 Sebi-Chr894 162905 172420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi894g00015 1 361 Core DNA Replication Machinery Family AT5G26680 86.704 0.0 664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi894g00015 K04799 - gmx:100792878 687.567