Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi894g00010 ATGGCTTCTTCCATTGCAGCCTTTTCTTCCATATACCAAACCTCCTCTCTTAAAAGACCAACTGCTACAACGGCCTCCGTTTCGTTATCCCGCTTCAACAACACCTTTCTCCTCCGAACTCACCCCAACAAACCCACACTCTCTTTGTTACTTCCGCCATTGCCACTCCCAACTCTTCCCTCCTCACTGAAGAAGCCTTCAAGGGCACTCTTGGTTTCGACGACCAATTTCGCTATGATTATGAGGCCGAGACCCCTGCCACTGTCAATGACAACGAGCTCGACATTTCCAAGCTTGAGAGCTGTGTTACTGCCTGCACTACAAGGTAGAGATATCATTGCTCGGGCAAAGACTGGGACTGGCAAGACATTAGCTTTTGGAATTCCAATTATTAAAAGTCTCAACGATGATGAACGAAGTCCTCAAAGGCGGTCTGGTCGTCTTCCGAAAGTATTGGTCCTTGCACCTACAAGGGAGTTAGCAAAGCAAGTAGAGAAAGAGATAAAAGAATCTGCTCCTTATCTAAATACAGTTTGTGTCTATGGTGGTGTTTCATATGTAACCCAGCAAAATGCACTCTCGCGTGGTGTTGATGTGGTGGTTGGAACACCTGGCAGAATAATTGACCTAATAAATGGGAACACCCTTAAACTGAGTGAAGTTCAGTATTTGGTCCTTGATGAAGCTGATCAGATGCTTGCTGTTGGGTTTGAGGAGGATGTTGAGGTCGGTGAGAAAGAAGAAAAGCTTGCTGAAGGGATCAAACTTTATGCTATATCAGCCACTGCAACTTCAAAGCGGACAATGCTTTCAGATCTTATAACTGTTTATGCAAAGGGTGGGAAGGCTATCGTTTTCACACAGACAAAAAGGGATGCTGATGAAGTATCATTGTCACTGACAAATAGTATAGCTTCTGAAGCACTGCATGGTGATATCTCTCAGCATCAAAGAGAGAGAACATTGAATGGTTTTCGGCAAGGGAAATTCACAGTGCTTGTTGCCACTGATGTTGCAGCTCGTGGACTTGATATTCCAAATGTTGATTTGGTTATACATTATGAACTTCCCAATGATCCTGAGACTTTTGTTCATCGCTCTGGTCGTACTGGACGTGCAGGAAAAGAGGGTACTGCTGTTCTAATGTACACCAGTAGCCAGAAGAGAACTGTTAGATCCCTTGAGCGTGATGTAGGCTGCAAATTTGAATTTATTAGTCCACCAGCTATGAAAGAAATTTTGGAATCATCTGCTGAGCAAGTTGTTGCTACACTAAGTAGAGTTCATCCTGAGTCTATTGAGGTTTTCACCGCAACTGCACAAAAACTGGTTGAGGAACAGGGAGCAAGTGTTCTTGCAGCTGCACTAGCACAGCTGAGTGGATTCTCTCGACCTCCATCATCCAGGTCTCTTATCAACCATGAACAGCTCATTAAAATGCTGGTGTTGCAGGGATGGATTACGTTACAACTGACTCGAGATCCAGATACTTCTAGAAGATCTCTTTCTGTTAGATCAGTCACTGGGTTTCTTTCTGATGTTTATTCTCCAGCTGCTGATGAAGTTGGAAAGATACATTTAATTGCAGATGAAAGGATTCAAGGAGCTGTTTTTGATCTTCCGGAGGACATTGCTAAAGAGTTACTCAATAAGGACATACCACCTGGAAACACTATTTCCAAGATCACCAAGTTACCTCCTTTGCAAGATGATGGACCTCCAAGTGATTACTATGGAAAGTTTTCTGACAGAGATCAAAGTAACCGAAGGCAAAGAGGTTCTAGGGACCAGAGAGGTTCTAAAACCTCATGGGGACGGCACAGGGACCAGGACTCTGGTGATGAGTTTGGTGATACATATGGGAGAGGTGGTAGAAGTTATAGATCTGGCAACAGCAAGTCTCGAGATGACTGGCTAATTGGAGGCAGACGATCAAGCAGGTTTGGTAATTTTCTTCTGACACAAGATATATAA 1974 0.4382 MASSIAAFSSIYQTSSLKRPTATTASVSLSRFNNTFLLRTHPNKPTLSLLLPPLPLPTLPSSLKKPSRALLVSTTNFAMIMRPRPLPLSMTTSSTFPSLRAVLLPALQGRDIIARAKTGTGKTLAFGIPIIKSLNDDERSPQRRSGRLPKVLVLAPTRELAKQVEKEIKESAPYLNTVCVYGGVSYVTQQNALSRGVDVVVGTPGRIIDLINGNTLKLSEVQYLVLDEADQMLAVGFEEDVEVGEKEEKLAEGIKLYAISATATSKRTMLSDLITVYAKGGKAIVFTQTKRDADEVSLSLTNSIASEALHGDISQHQRERTLNGFRQGKFTVLVATDVAARGLDIPNVDLVIHYELPNDPETFVHRSGRTGRAGKEGTAVLMYTSSQKRTVRSLERDVGCKFEFISPPAMKEILESSAEQVVATLSRVHPESIEVFTATAQKLVEEQGASVLAAALAQLSGFSRPPSSRSLINHEQLIKMLVLQGWITLQLTRDPDTSRRSLSVRSVTGFLSDVYSPAADEVGKIHLIADERIQGAVFDLPEDIAKELLNKDIPPGNTISKITKLPPLQDDGPPSDYYGKFSDRDQSNRRQRGSRDQRGSKTSWGRHRDQDSGDEFGDTYGRGGRSYRSGNSKSRDDWLIGGRRSSRFGNFLLTQDI 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi894g00010 657 FunFam Nucleolar RNA helicase II 262 452 - -
Sebi894g00010 657 CDD SF2_C_DEAD 254 383 - -
Sebi894g00010 657 CDD GUCT_Hera 468 556 - -
Sebi894g00010 657 Gene3D - 305 393 IPR027417 -
Sebi894g00010 657 SMART helicmild6 294 374 IPR001650 -
Sebi894g00010 657 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 269 414 IPR001650 -
Sebi894g00010 657 Pfam DEAD/DEAH box helicase 104 265 IPR011545 GO:0003676|GO:0005524
Sebi894g00010 657 Pfam GUCT (NUC152) domain 461 569 IPR012562 GO:0003723|GO:0004386|GO:0005524
Sebi894g00010 657 SMART ultradead3 91 289 IPR014001 -
Sebi894g00010 657 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 103 281 IPR014001 -
Sebi894g00010 657 MobiDBLite consensus disorder prediction 582 618 - -
Sebi894g00010 657 Gene3D - 88 279 IPR027417 -
Sebi894g00010 657 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 150 395 IPR027417 -
Sebi894g00010 657 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 244 609 - -
Sebi894g00010 657 MobiDBLite consensus disorder prediction 550 638 - -
Sebi894g00010 657 CDD DEADc 100 242 - -
Sebi894g00010 657 Pfam Helicase conserved C-terminal domain 267 374 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi894g00010 Sebi-Chr894 90415 96277 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi894g00010 100 396 Eukaryotic Initiation Factors Gene Family AT3G19760 33.923 2.93e-51 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi894g00010 - K16911 pcin:129296705 838.565