Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi894g00004 ATGGAAAAGCTAATTTTCAGTGGCCTGTTACTGTTAGTGCTTGTGGGGTTATTCACCACAGAACTTAGAGTAGCAAGCGCAGCTTGGCTGCAAGCTCATGCAACTTTCTACGGTGGAAGTGATGCCTCAGGAACTATGGGGGGCGCATGTGGCTACGGAAATCTCTTCACGGATGGTTATGGAATAAAAACTGCTGCTTTGAGTACTGTTTTGTTTAATGATGGCAAGTCATGTGGTGGTTGCTATCAGATTGTTTGTGATGCAAATCAAGCTCCCCAATGGTGCCTCAGGGGAACTTCCATCACAATTACTGCCACAAATTTCTGTCCCCCAAACTTTGCACTCCCTAATGACAATGGTGGTTGGTGCAATCCTCCTAGACCACACTTTGACATGTCTCAACCCGCTTTTGAGATGATCGCCAAATACAGGGCTGGAATTGTTCCAATTTTTTACAGAAAAGTTGGGTGCAAAAGAACTGGAGGCATCAGATTTACCATCAATGGAAGAGACTATTTTGAACTTGTGCTTATAAGCAACGTAGGTGGAGCAGGGGAGATCTCCCGCGTTTGGATCAAAGGGTCGAAAATGAATAACTGGGAATCCATGTCAAGGAATTGGGGAGCTAACTGGCAGAGCTTAAGCTATCTCAATGGTCAGAGCTTGTCCTTCAGAGTCCAACTCAGCAATGGAAAGACTCGCACAGCTTATAATGTGGCACCGTCCAGTTGGACATTTGGCCAGTCTTTCATCAGCAAGGTTCAATTCTGA 771 0.454 MEKLIFSGLLLLVLVGLFTTELRVASAAWLQAHATFYGGSDASGTMGGACGYGNLFTDGYGIKTAALSTVLFNDGKSCGGCYQIVCDANQAPQWCLRGTSITITATNFCPPNFALPNDNGGWCNPPRPHFDMSQPAFEMIAKYRAGIVPIFYRKVGCKRTGGIRFTINGRDYFELVLISNVGGAGEISRVWIKGSKMNNWESMSRNWGANWQSLSYLNGQSLSFRVQLSNGKTRTAYNVAPSSWTFGQSFISKVQF 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi894g00004 256 PRINTS Expansin/Lol pI family signature 145 161 IPR007118 GO:0005576
Sebi894g00004 256 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Sebi894g00004 256 PRINTS Expansin/Lol pI family signature 46 64 IPR007118 GO:0005576
Sebi894g00004 256 PRINTS Expansin/Lol pI family signature 68 86 IPR007118 GO:0005576
Sebi894g00004 256 PRINTS Expansin/Lol pI family signature 28 43 IPR007118 GO:0005576
Sebi894g00004 256 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Sebi894g00004 256 FunFam Expansin 162 256 - -
Sebi894g00004 256 PANTHER EXPANSIN-A15 10 253 IPR002963 GO:0009664
Sebi894g00004 256 CDD DPBB_EXPA_N 29 157 - -
Sebi894g00004 256 SMART dpbb_1 64 152 IPR007112 -
Sebi894g00004 256 Pfam Lytic transglycolase 64 152 IPR009009 -
Sebi894g00004 256 Gene3D - 162 256 IPR036749 -
Sebi894g00004 256 Pfam Expansin C-terminal domain 163 241 IPR007117 -
Sebi894g00004 256 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 47 162 IPR007112 -
Sebi894g00004 256 PRINTS Expansin signature 101 111 IPR002963 GO:0009664
Sebi894g00004 256 PRINTS Expansin signature 161 173 IPR002963 GO:0009664
Sebi894g00004 256 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Sebi894g00004 256 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Sebi894g00004 256 PRINTS Expansin signature 120 137 IPR002963 GO:0009664
Sebi894g00004 256 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Sebi894g00004 256 PRINTS Expansin signature 137 150 IPR002963 GO:0009664
Sebi894g00004 256 PRINTS Expansin signature 173 194 IPR002963 GO:0009664
Sebi894g00004 256 PRINTS Expansin signature 59 73 IPR002963 GO:0009664
Sebi894g00004 256 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 172 252 IPR007117 -
Sebi894g00004 256 SUPERFAMILY Barwin-like endoglucanases 22 180 IPR036908 -
Sebi894g00004 256 Gene3D - 18 158 IPR036908 -
Sebi894g00004 256 SUPERFAMILY PHL pollen allergen 159 252 IPR036749 -
Sebi894g00004 256 FunFam Expansin 19 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi894g00004 Sebi-Chr894 30318 31347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi894g00004 5 256 Expansin Gene Family AT4G01630 75.000 1.50e-146 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi894g00004 - - gmx:100783801 491.115