LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi894g00004	ATGGAAAAGCTAATTTTCAGTGGCCTGTTACTGTTAGTGCTTGTGGGGTTATTCACCACAGAACTTAGAGTAGCAAGCGCAGCTTGGCTGCAAGCTCATGCAACTTTCTACGGTGGAAGTGATGCCTCAGGAACTATGGGGGGCGCATGTGGCTACGGAAATCTCTTCACGGATGGTTATGGAATAAAAACTGCTGCTTTGAGTACTGTTTTGTTTAATGATGGCAAGTCATGTGGTGGTTGCTATCAGATTGTTTGTGATGCAAATCAAGCTCCCCAATGGTGCCTCAGGGGAACTTCCATCACAATTACTGCCACAAATTTCTGTCCCCCAAACTTTGCACTCCCTAATGACAATGGTGGTTGGTGCAATCCTCCTAGACCACACTTTGACATGTCTCAACCCGCTTTTGAGATGATCGCCAAATACAGGGCTGGAATTGTTCCAATTTTTTACAGAAAAGTTGGGTGCAAAAGAACTGGAGGCATCAGATTTACCATCAATGGAAGAGACTATTTTGAACTTGTGCTTATAAGCAACGTAGGTGGAGCAGGGGAGATCTCCCGCGTTTGGATCAAAGGGTCGAAAATGAATAACTGGGAATCCATGTCAAGGAATTGGGGAGCTAACTGGCAGAGCTTAAGCTATCTCAATGGTCAGAGCTTGTCCTTCAGAGTCCAACTCAGCAATGGAAAGACTCGCACAGCTTATAATGTGGCACCGTCCAGTTGGACATTTGGCCAGTCTTTCATCAGCAAGGTTCAATTCTGA	771	0.454	MEKLIFSGLLLLVLVGLFTTELRVASAAWLQAHATFYGGSDASGTMGGACGYGNLFTDGYGIKTAALSTVLFNDGKSCGGCYQIVCDANQAPQWCLRGTSITITATNFCPPNFALPNDNGGWCNPPRPHFDMSQPAFEMIAKYRAGIVPIFYRKVGCKRTGGIRFTINGRDYFELVLISNVGGAGEISRVWIKGSKMNNWESMSRNWGANWQSLSYLNGQSLSFRVQLSNGKTRTAYNVAPSSWTFGQSFISKVQF	256

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi894g00004	256	PRINTS	Expansin/Lol pI family signature	145	161	IPR007118	GO:0005576
	Sebi894g00004	256	PRINTS	Expansin/Lol pI family signature	200	214	IPR007118	GO:0005576
	Sebi894g00004	256	PRINTS	Expansin/Lol pI family signature	46	64	IPR007118	GO:0005576
	Sebi894g00004	256	PRINTS	Expansin/Lol pI family signature	68	86	IPR007118	GO:0005576
	Sebi894g00004	256	PRINTS	Expansin/Lol pI family signature	28	43	IPR007118	GO:0005576
	Sebi894g00004	256	PRINTS	Expansin/Lol pI family signature	238	252	IPR007118	GO:0005576
	Sebi894g00004	256	FunFam	Expansin	162	256	-	-
	Sebi894g00004	256	PANTHER	EXPANSIN-A15	10	253	IPR002963	GO:0009664
	Sebi894g00004	256	CDD	DPBB_EXPA_N	29	157	-	-
	Sebi894g00004	256	SMART	dpbb_1	64	152	IPR007112	-

Showing 1 to 10 of 28 entries

Previous1 2 3Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi894g00004	Sebi-Chr894	30318	31347	Dispersed/Wgd

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi894g00004	5	256	Expansin Gene Family	AT4G01630	75.000	1.50e-146	408

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi894g00004	-		-	gmx:100783801	491.115

Showing 1 to 1 of 1 entries