Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi893g00014 ATGGCGGTGTTGTCAGAAGTGATGGAGGATGATGAACTTGACGAAGAGCCAGGCGAGGTCATCGAATCGGCACCGCCCCAGAAGGTCGGCGAAGAGAGGCAACTCGGTAGTAACTCCTCTCTCAAAAAGAAGCTCCTAAAAAACGGACATGGATGGGAAACCCCCGACTTCAACGACCAAGTTACTGTTCACTACGTCGGAACTTCACCTAATGGAACAAAGTTCGATTCCACTAGGGATTCAGATCAACCTCTGGCATTCACTCTTGGTCAAGGTAAAGTGTATGCTGGGTTGGATCATGGGATTATCACCATGAAGAAGGGAGAGGTGGCATTGTTCACGTTACCTGCTGAGTCTGGAGGAGTTCCACATGACTCCAACTCGGTTGTGCAGTTTGAGGTGGAACTCATTTCGTGGATCAAGGTGGTGGATGTTTGCAAAGATGGTGGAATTATCAAGAAAATTATGGAGAAGGGGAAAGGGAATGAGCGGCCTGGTGATCAAGATGAAGTCCTTGTGAAGTATCAGGTGGCACTAGTTGATGGTACTGTTGTTGCAGAAACACCAGAAGCAGGAGTTGAATTTCATGTGAAGGATGGTCATCTTTTTCCTAGATTTCCAAAAGTAGTCATGACTATGACAAGGGGAGAGAAGGCTGAGTTAGTTGTTCAATCTCAGTATGCCTTTGGGGAGAAGGGGAGAGAAGCTGGCAGCGGGCTCCATTCAATTCCCCCAAATTCAGTGCTGCATGTTAATATTGAATTGGTGTCCTTCAAGCCTGTCATAAATGTTACTGGTGACTCCATGGTGCTTAAGAAGATTGTGAAAGAAGGGGAGGGTGCTTTCACAGCCGGTGAGGGTGCAAATGTTACTGTCAGCTACACAGCTATGCTAGAAGATGGCACTGTGTTTGAGAAAGGAGGAATTGGTGAAACACAACCCGTGAAATTCATAACTGATGAGGAACAAGTGATTGCTGGTCTAGACCGAGCGGTGTCAACAATGAAAAAGGGTGAGAGGGCCATAATTAGCATACATCCTGATTATGCATTTGGAAATGTTGAAGTGAGACGAGATTTAGCTATCGTGCCACCAGGCTCGAATGTAGTGTATGACATTGAGATGATGGATTTTATTAAGGAGAAAGCACCATGGGAATTGAATAGTAATGAGAAAATTGAGGTGGCTGGGAGGAAGAAAGAAGAAGGAAATTTATTGTTTAAAGGTGGCAAGTATCATCAAGCAGGGAAGAAGTATGAAAAGGCTGCTGATTTTGTTAGTGAAGATGGATCCTTTGGGGATGATGAGCACAAGCTAGCTAAGGCATTGAGAGTGACATGCTGGTTGAATGGTGCAGCTTGTAGCCTTAAACTTAATGACTTTCCTGGAGCAATCAAACTATGTTCTCAGGTGCTTGATGTTGAGCTTTACAATGTGAAAGCTTTGTACAGACGGGCACAAGCATTTATAGAGACTGGAGACTATCTTTTGGCAGATGTAGACATCAAGAAAGTTCTTGAGGTGGACCCTCATAACAGGGAGGTAATGATAATTAAGAGGAAATTGAAGCAACTTCAAGCTGACAGTGACAAAAAAGATGCTAAGCTGTATGAAAATATGTTTGCACCAAAAACAAAGGACTCATCCATGGCAACAAAG 1659 0.4418 MAVLSEVMEDDELDEEPGEVIESAPPQKVGEERQLGSNSSLKKKLLKNGHGWETPDFNDQVTVHYVGTSPNGTKFDSTRDSDQPLAFTLGQGKVYAGLDHGIITMKKGEVALFTLPAESGGVPHDSNSVVQFEVELISWIKVVDVCKDGGIIKKIMEKGKGNERPGDQDEVLVKYQVALVDGTVVAETPEAGVEFHVKDGHLFPRFPKVVMTMTRGEKAELVVQSQYAFGEKGREAGSGLHSIPPNSVLHVNIELVSFKPVINVTGDSMVLKKIVKEGEGAFTAGEGANVTVSYTAMLEDGTVFEKGGIGETQPVKFITDEEQVIAGLDRAVSTMKKGERAIISIHPDYAFGNVEVRRDLAIVPPGSNVVYDIEMMDFIKEKAPWELNSNEKIEVAGRKKEEGNLLFKGGKYHQAGKKYEKAADFVSEDGSFGDDEHKLAKALRVTCWLNGAACSLKLNDFPGAIKLCSQVLDVELYNVKALYRRAQAFIETGDYLLADVDIKKVLEVDPHNREVMIIKRKLKQLQADSDKKDAKLYENMFAPKTKDSSMATK 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi893g00014 553 SUPERFAMILY FKBP-like 38 142 - -
Sebi893g00014 553 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 58 259 IPR001179 GO:0003755
Sebi893g00014 553 Gene3D Tetratricopeptide repeat domain 384 539 IPR011990 GO:0005515
Sebi893g00014 553 SUPERFAMILY TPR-like 391 542 IPR011990 GO:0005515
Sebi893g00014 553 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 287 379 IPR001179 GO:0003755
Sebi893g00014 553 FunFam Peptidylprolyl isomerase 384 539 - -
Sebi893g00014 553 Gene3D - 259 383 IPR046357 GO:0003755
Sebi893g00014 553 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 163 256 IPR001179 GO:0003755
Sebi893g00014 553 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 54 137 IPR001179 GO:0003755
Sebi893g00014 553 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 284 375 IPR001179 GO:0003755
Sebi893g00014 553 SUPERFAMILY FKBP-like 144 259 - -
Sebi893g00014 553 PANTHER PEPTIDYLPROLYL ISOMERASE 141 260 - -
Sebi893g00014 553 ProSiteProfiles TPR repeat profile. 479 512 IPR019734 GO:0005515
Sebi893g00014 553 FunFam Peptidylprolyl isomerase 260 381 - -
Sebi893g00014 553 SUPERFAMILY FKBP-like 265 396 - -
Sebi893g00014 553 Gene3D - 142 258 IPR046357 GO:0003755
Sebi893g00014 553 SMART tpr_5 445 478 IPR019734 GO:0005515
Sebi893g00014 553 SMART tpr_5 396 429 IPR019734 GO:0005515
Sebi893g00014 553 SMART tpr_5 479 512 IPR019734 GO:0005515
Sebi893g00014 553 Gene3D - 33 141 IPR046357 GO:0003755
Sebi893g00014 553 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi893g00014 Sebi-Chr893 260713 265864 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi893g00014 28 542 Calmodulin-binding Proteins AT3G25230 54.406 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi893g00014 K09571 - gmx:100798382 851.277