Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi893g00012 ATGCCTCTGTATCAACCATCTAACGAGAGAAAAGATGAGGATGTGAAGATTGATGCTGTTCTGGGTCTACAAACCGCCATGAAAGGTGGTGTTTTGGGTGGCAACACCACTGAGAAATTGGATCTGAAGGTGATGATTGAGGAGATGGAGTCAATTGATGTGCCTTCAGTGTTTATCTGTCCAATCTCACTTGAGCCAATGCAGGATCCTGTGACCCTTTGCACTGGTCAAACATATGACAGATCCAACATCCTCAAATGGTTCTCACTAGGTCACAACACTTGTCCCACAACAATGCAAGAGCTTTGGGATGATTCTGTCACCCCCAACAAGACTCTCAGCCAGTTAATCCTCACTTGGTTTTCACAGAAGTATTTGGCCATGAAGAAGAAGCTTGAGGATGTGCAAGGAAGAGTCTTGGACCTCTTGGACAGGCTCAAGAAGGTAAAAGGTCAAGCTAGAGTTAGAGCTCTTAAGGATCTTCGCCAACTTGTTGTTGCTCATGTGTCTGCTAGGAAGACTGTTGCAGAAAATGGTGGACTTGCTTTGGTTTCTTCTTTGTTAGGTCCTTTCACTTCCCATGCTGTTGGTTCTGAAGCTATTGGAATCATTGTGAATTTGGATTTAAGCTCAGAGGTGAAGAGAAATCTGATGCATCCGGCAAAGGTTTCACTTTTGGTGGATATTATGAATGAGGGAACCATTGAGACAAAGATGAACTGTGCCAAATTGATTGAGATGTTGTTGATGGAAGGGAATGGAACTGAGACAGAGATTGTCTCAAGCTTGAGTCTTTTGGTTGGTTTATTGAGGTTAGTGAGGGATAAGAAACACCCAACTGGGGTCTTAACTGGCCTCATATTACTCAAGGCTATTTGTTCACATGAATCAGTTAGAAGCTCTGTGGTAAGCATAGGAGCAATTCCTCAATTAATTGAGCTTTTGCCCACTTTGAATAATGAGTGTTTAGAGATAGCACTGTATATTCTAGAGGTATTGTCAACACTTCCAGAGGGAAGGATGGCTTTGAAAGAATGTCCAAACATAATTCCCAATGTGGTCAAGTTGTTGATGAGAGTCTCAGAGAGCTGCACACAATTTGCATTGTCAATATTGTGGTCTATCTACAAGCTTGCCCCTGAAGAATGTGCATCACAAGCAGTGGAGGCTGGGTTGGCAGCAAAACTATTACTAGTGATTCAGAGTGGCTGTAACCCAGTTTTGAAGCAGATGTCTTCTGAGTTTTTAAAAATGTGCAGTCTGAATTACTCTACAAATATCTTGATTTCCAAATGTATGCTCACCACAACAATACAATGA 1320 0.4212 MPLYQPSNERKDEDVKIDAVLGLQTAMKGGVLGGNTTEKLDLKVMIEEMESIDVPSVFICPISLEPMQDPVTLCTGQTYDRSNILKWFSLGHNTCPTTMQELWDDSVTPNKTLSQLILTWFSQKYLAMKKKLEDVQGRVLDLLDRLKKVKGQARVRALKDLRQLVVAHVSARKTVAENGGLALVSSLLGPFTSHAVGSEAIGIIVNLDLSSEVKRNLMHPAKVSLLVDIMNEGTIETKMNCAKLIEMLLMEGNGTETEIVSSLSLLVGLLRLVRDKKHPTGVLTGLILLKAICSHESVRSSVVSIGAIPQLIELLPTLNNECLEIALYILEVLSTLPEGRMALKECPNIIPNVVKLLMRVSESCTQFALSILWSIYKLAPEECASQAVEAGLAAKLLLVIQSGCNPVLKQMSSEFLKMCSLNYSTNILISKCMLTTTIQ 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi893g00012 439 SUPERFAMILY ARM repeat 139 271 IPR016024 -
Sebi893g00012 439 Pfam U-box domain 54 124 IPR003613 GO:0004842|GO:0016567
Sebi893g00012 439 SUPERFAMILY ARM repeat 258 425 IPR016024 -
Sebi893g00012 439 SMART Ubox_2 57 120 IPR003613 GO:0004842|GO:0016567
Sebi893g00012 439 ProSiteProfiles U-box domain profile. 53 127 IPR003613 GO:0004842|GO:0016567
Sebi893g00012 439 SUPERFAMILY RING/U-box 48 124 - -
Sebi893g00012 439 CDD RING-Ubox_PUB 55 107 IPR045210 -
Sebi893g00012 439 Gene3D - 138 418 IPR011989 -
Sebi893g00012 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 136 IPR013083 -
Sebi893g00012 439 PANTHER WDSAM1 PROTEIN 47 425 IPR045185 GO:0061630
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi893g00012 Sebi-Chr893 163200 164519 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi893g00012 1 439 U-box Gene Family AT3G49810 60.832 0.0 554
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi893g00012 - - gmx:100803878 676.011