Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi892g00010 GATGGAGCTGCCAAGACAATTGTCTTCCAATTTCAGTGTGTGACGTGGAAATTGGAAAAACTATTAAGCAACTTGCCATATGATGATTTAGACATCTCAGAGGAAGTCAAAGAACAGGTGGATTTGGTTAGAACACAATTGAGAAGAGCGGCAGAAAAATATGGGTTTATGATTTCAAAAATGCCATCTTATGAATTATCCCAGTCCCTAGCTCAAGAAATTAGTCAGGTTCTTGGCAAACCTGCAAATGGATTGCAGAAACAAAACAGCTGTCCTGAAAATTTATCAGAACTAGACAGCATTCCTGTAAACAATGGAAGGAAAAGTTGCAGCACGACTGGGGCTGGATCTCGCTTGGAAAGAACAAGGAGCATTCCCACCTCTTCTGAGGTTTCCTTATCGAATGTAACTGAGCCTGAAAATAAAGAAATTTCTGAGAGAAAGAGTCTATCTGAGGTTAAAAAGACTGAAGCAATTGTAATTCCTGAAGATTTCCTTTGCCCTATATCCTTGGAACTAATGAGGGATCCTGTTATCGTGGCCACTGGTCAGACATATGAGAGATCTTACATACAGAGATGGATAGATTGTGGAAATGTAACTTGTCCAAAAACTCAGCAGAAGCTCCAGCATTTGACCCTTACACCAAATTATGTTTTAAGGAGCCTTATTACTCAGTGGTGTATAGACCACAACATTGAGCAGCCAACGGGACTAACTAATGGCAAAATAAAAAAGAGTGATGGATCGTTCAGAGATGTTACAGGTGACATAGCAGCAATCGAAACTCTGGTCCGGAAGCTCTCCAGCCGATCCATTGAGGAGCGTAGAGCTGCTGTTGCTGAAATTCGATCACTATCAAAACGAAGCACTGACAATAGGATACTAATTGCTGAAGCTGGAGCAATTCCAGTTCTAGTCAACCTTTTAACATCAGAAGATGTATTGACGCAAGACAATGCAGTTACTGCAATTCTCAACCTTTCTATATATGAAAACAACAAGGGACTTATAATGCTTGCTGGTGCTATTCCCTCCATTGTCCAAGTCCTCCGAGCTGGAACCATGGAAGCAAGAGAAAATGCTGCAGCAACCCTCTTTAGCTTGTCACTTGCAGATGAGAACAAAATAATAATTGGTGCCTCAGGAGCTATACCCGCATTGGTAGAATTACTCCAAAATGGGAGCCCTAGAGGAAAGAAGGATGCAGCAACAGCATTGTTCAATTTATGCATTTATCAAGGGAACAAAGGCAGGGCCATTAGGGCAGGGATCATCACAGCATTGTTGAAGATGCTTACAGATTCAAGCAAATCAATGGTTGACGAAGCCCTAACAATAATGTCAGTTCTTGCCAGCCACCAAGAGGCAAAGGTTGCTATTGTAAAAGCCAGCACTATTCCAGTTTTAATAGATCTTTTGAGGACAGGATTGCCTCGCAACAAAGAGAATGCAGCTGCCATTTTTACTTGCATTGTGCAAGAGGGATGCTGA 1494 0.417 DGAAKTIVFQFQCVTWKLEKLLSNLPYDDLDISEEVKEQVDLVRTQLRRAAEKYGFMISKMPSYELSQSLAQEISQVLGKPANGLQKQNSCPENLSELDSIPVNNGRKSCSTTGAGSRLERTRSIPTSSEVSLSNVTEPENKEISERKSLSEVKKTEAIVIPEDFLCPISLELMRDPVIVATGQTYERSYIQRWIDCGNVTCPKTQQKLQHLTLTPNYVLRSLITQWCIDHNIEQPTGLTNGKIKKSDGSFRDVTGDIAAIETLVRKLSSRSIEERRAAVAEIRSLSKRSTDNRILIAEAGAIPVLVNLLTSEDVLTQDNAVTAILNLSIYENNKGLIMLAGAIPSIVQVLRAGTMEARENAAATLFSLSLADENKIIIGASGAIPALVELLQNGSPRGKKDAATALFNLCIYQGNKGRAIRAGIITALLKMLTDSSKSMVDEALTIMSVLASHQEAKVAIVKASTIPVLIDLLRTGLPRNKENAAAIFTCIVQEGC 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi892g00010 497 SMART Ubox_2 164 227 IPR003613 GO:0004842|GO:0016567
Sebi892g00010 497 Pfam U-box domain 161 231 IPR003613 GO:0004842|GO:0016567
Sebi892g00010 497 FunFam RING-type E3 ubiquitin transferase 239 439 - -
Sebi892g00010 497 ProSiteProfiles U-box domain profile. 160 234 IPR003613 GO:0004842|GO:0016567
Sebi892g00010 497 PANTHER U BOX DOMAIN-CONTAINING 10 489 - -
Sebi892g00010 497 Coils Coil 33 53 - -
Sebi892g00010 497 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 383 425 IPR000225 GO:0005515
Sebi892g00010 497 Gene3D - 240 496 IPR011989 -
Sebi892g00010 497 SMART arm_5 454 494 IPR000225 GO:0005515
Sebi892g00010 497 SMART arm_5 413 453 IPR000225 GO:0005515
Sebi892g00010 497 SMART arm_5 372 412 IPR000225 GO:0005515
Sebi892g00010 497 SMART arm_5 331 371 IPR000225 GO:0005515
Sebi892g00010 497 SMART arm_5 290 330 IPR000225 GO:0005515
Sebi892g00010 497 Pfam Armadillo/beta-catenin-like repeat 291 329 IPR000225 GO:0005515
Sebi892g00010 497 Pfam Armadillo/beta-catenin-like repeat 373 411 IPR000225 GO:0005515
Sebi892g00010 497 SUPERFAMILY ARM repeat 260 493 IPR016024 -
Sebi892g00010 497 FunFam RING-type E3 ubiquitin transferase 160 235 - -
Sebi892g00010 497 SUPERFAMILY RING/U-box 159 235 - -
Sebi892g00010 497 MobiDBLite consensus disorder prediction 106 139 - -
Sebi892g00010 497 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 424 466 IPR000225 GO:0005515
Sebi892g00010 497 MobiDBLite consensus disorder prediction 106 148 - -
Sebi892g00010 497 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 342 384 IPR000225 GO:0005515
Sebi892g00010 497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 159 234 IPR013083 -
Sebi892g00010 497 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 301 343 IPR000225 GO:0005515
Sebi892g00010 497 CDD RING-Ubox_PUB 162 214 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi892g00010 Sebi-Chr892 185047 186719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi892g00010 1 489 U-box Gene Family AT1G23030 64.185 0.0 606
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi892g00010 - - gmx:100815448 857.055