Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi892g00002 ATGTCTAATAGTCAGAACAATCTTCTTATGATCGACGAAATTTGTCCAGAAATTTACACATGGGAAGTTAAAATTCGGGTTATACGGATGTGGATTCATACAGGAGATAACTCTTCATCTTATTCTGGTGATGTGTTTTTCATGGACATGGTTCTCATAGATTCCCAGGGGAAAAAGATCCAAGCTACAATTCATAGGGATCTTCTAAGTTCACTATCTTTTCGCATAGTGGAGGATGAATTTTATTTGATAGGAGATTTGAATGTTGTCCCAAACATTGGAAGTGATAGAGTCACTGATCATCCCTACAAGCTGATTTTTAACAAAGCCTCCAAAATAGAAGTTTCTGAGCCTGAACAATATTATGCTTTTGGATTATCTCAAAAATCTGCATCTGTCATCGATGAAGGGAAGTATCCCGATCATCCTTTGATAGATTTTGTTGGTGTTGTCACTGCAGTTTCTACGTGTAGGGAGTGCATCAAACCTAATGGGATTACTAAATTGACATACCTAGAGATTTCGGACCACACAGGTATAGTTGAGTGTGTGCTTTTTGATGATTTGGCTGAAGTTGTGTTGCGATATTTGACATCACACGGCAGATTTTCTCCTATCATTGTTATTCAATTTGCAAGCATCTTCCCAGTAAAGGGAATTTTCTTCGGTGATTCTGTGATTGAAAGTGTTCCTAATTTGACAAAGGTCTTATTCAATCCATCTTTTCAAGAAGTGGATGAATTCAAAAAAAGGCTTGTGCAAAACAAAATTGACCTCCATGGCCAGCTTCTTTATCGTTGGTCTGGTTCCAACTCTTTATCTGAACGAGAAGAATTCCTTCTGTTGAATCGGAGGAATTCAGTTGGCCAATTACTTTCAAAGGGAGAGGCTGGTATATATATCATTTGCGCAAGGGTTACTGGAGTCGTGGAGGAAACTCCATGGTGGTATAGCACGGACAAACCAGATGTTAAGCCGCAAGGGTTATCGAATGTGGAAATTAGTGAATGGCTCAATGTCATAAACCCAAAGTATTGCTTAACAGTTAGGGTTAATGATGGAAAGAATTCATGTTATCTTGCTCTCTTTGATGAAGCTGTTGAATTGATGATTGGTGTTCCTTGCCATGCTCTTCTCTTTAATGCAGGCGATCCATATTCTGCTGAATTCCCAGACGTATTGAAGGATATAGTTGGAAGACAATTCCTTTTTAAATTAGAAAGGACCAAAAGTTACTTCACTTCACTTGAGTCTTGCTTCAAAGTTTTAAAAGTTTGCTGTGATCGTGATGTAGTTCTTATGTATCCTGAAGACCATTATTTCCTGGATAACCATCACTTAAAGGAGAAATCTCAGCGTCCCATTAGTTTCTTTGATTACTACTTTAGATCTGATCGGTGTGGAATTCAACTTGGGTGTGCTATGAAAATTGATGAAGAGACTGGATTAATTAATGACGATGGAGGGGAGGGATGCTCAAACCCAACGCAAACTTGCAGGTCTGGTAGCTCTGACCAAGAATTTAGTCTGGGAAATGATTCAGATGATTATGATTAA 1557 0.3841 MSNSQNNLLMIDEICPEIYTWEVKIRVIRMWIHTGDNSSSYSGDVFFMDMVLIDSQGKKIQATIHRDLLSSLSFRIVEDEFYLIGDLNVVPNIGSDRVTDHPYKLIFNKASKIEVSEPEQYYAFGLSQKSASVIDEGKYPDHPLIDFVGVVTAVSTCRECIKPNGITKLTYLEISDHTGIVECVLFDDLAEVVLRYLTSHGRFSPIIVIQFASIFPVKGIFFGDSVIESVPNLTKVLFNPSFQEVDEFKKRLVQNKIDLHGQLLYRWSGSNSLSEREEFLLLNRRNSVGQLLSKGEAGIYIICARVTGVVEETPWWYSTDKPDVKPQGLSNVEISEWLNVINPKYCLTVRVNDGKNSCYLALFDEAVELMIGVPCHALLFNAGDPYSAEFPDVLKDIVGRQFLFKLERTKSYFTSLESCFKVLKVCCDRDVVLMYPEDHYFLDNHHLKEKSQRPISFFDYYFRSDRCGIQLGCAMKIDEETGLINDDGGEGCSNPTQTCRSGSSDQEFSLGNDSDDYD 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi892g00002 518 Gene3D - 128 259 IPR012340 -
Sebi892g00002 518 CDD RPA1_DBD_B_like 146 252 - -
Sebi892g00002 518 Gene3D - 6 115 IPR012340 -
Sebi892g00002 518 SUPERFAMILY Nucleic acid-binding proteins 341 415 IPR012340 -
Sebi892g00002 518 MobiDBLite consensus disorder prediction 490 510 - -
Sebi892g00002 518 SUPERFAMILY Nucleic acid-binding proteins 142 252 IPR012340 -
Sebi892g00002 518 Pfam Domain of unknown function DUF223 50 119 IPR003871 -
Sebi892g00002 518 MobiDBLite consensus disorder prediction 486 518 - -
Sebi892g00002 518 CDD RPA1_DBD_A_like 23 113 - -
Sebi892g00002 518 Gene3D - 271 426 IPR012340 -
Sebi892g00002 518 SUPERFAMILY Nucleic acid-binding proteins 7 118 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi892g00002 Sebi-Chr892 6381 9271 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi892g00002 20 415 Core DNA Replication Machinery Family AT5G08020 21.911 2.45e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi892g00002 - - lja:Lj6g3v0884310.1 222.246