Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi892g00001 ATGGCTGGTCCTTTCGATATGATAAGCAATATTTTTCCTGGAAGAGACACTTGGAGGCTCAAGGTTCCCATTGGCCGCTTATGGAATATGACTCCAATTGATGACCCTGTCAAACCTTTTTCTGTGCAAATGATCCTCGTGGATGCAGAGGGTGGTAGAATCCAGGCTGGCATCAAAAAGCATTTGATGAGGAAATTTGCAAATTTATTGGTTGAAGGTGCTGTGTACAAGATGGCTTATTTCGAAGTAGTTAGAAACCTTGGTTCATATCGAGCCACAGAGCATGAGTTTCGTCTATTCTTTGATTCGAGAACCAGGGTTGTGCCAACTGAGAGTGAACTCATTCCAAGGTTTGGCTTCTCTTTGAAGAACACACAAGATGTGGTGGACACGAAGGGCAAATCAGATTACTTGATGGATTTTATGGGGGTGTTGTTGGCTGTCTCAAATGAGAAGCGTATAATGAAGGAAGGCAAGCTAACGAGGGTTATTGTTCTTGAACTTGCTGATGAGAAGGGAAGGATAAGATGTTCTCTTTTTGGTGATTTTGTTGATATGGTCACAAACTTCCTGTCCGAGGGGAAGAATGAGCTTCCCATAATCATAATACAACTTGCAAGGGTCTCATCTTACAAGGGTTCAATTGTTTTACAAAATGTGATGAATGCCACAAAACTTTTCTGGAACCCACAAATACCTGAGGCTGTTGATTTTAAAAATGGAATCTCTTCGAATGACATTGATATCGATGTATCTGTTGGTTTAATTGAGGATAACACCCGAGTTATGTCATTGAAAGAGGAATTTCTTGATGCATACCCGAGGAAAACTATTAGTCAGCTACAATATATATTGGAGGAGGGCATGTACATTGTTAGTGGAACTGTTGAAAGAGTTTCTGAGGAAGGGCTTTGGTGGTATATGGGCGGTAAGTGTCAAAGGTCCGTCATTCAGGATGCAGGTGGTTTCTACTGTTCCTGGTGCGAGACAATTGTCTACGAAGTGACTCCAAGGTACAAGCTGCTTTTAGAAGTTAATGACGGGCAGGAGAAAGCCAATTTCATGATCTTTGACACTGATGTCTACAGTGTACTTCAGATCAGCTGCAAGGACCTTATGTCTGGAATGAAGGACCTAGAACTAGGGCCATATCCTGAGGAATTTAAGAAGTTTTTAGGTATGGAATGTCTATTCAAGGTCCAGATCAAAGGAAACTGTCAAACTACATATGGTGATGCCTTCACCGTTAAGAAACTTTGTTATCAAGAGGATATTGTTCAGGGTTTCAAAGATGAAAATACAATCAGGACCCCTGAAATGCTGAAGTTTAATCCTCCTTTCACGAAAATGCAGACTGTTGCATCATCATCTGCTCCTCTTTCTGATGTCACTGCTGATCAGTTAGGAGATTCTGAGTGCCAAGTCTCTCTTAATGAACTTCAAGAAAGTACAATTCATAGTGGGGATGTTTTGTTTGCTGACAAGAGGAAAGTTGATGTTGAAGGATCACCACCTCAAGTTCCGAGGAAGAGATGTAGAGTGAAATCCATTAAGCTTGAAAGGACTTAG 1569 0.4117 MAGPFDMISNIFPGRDTWRLKVPIGRLWNMTPIDDPVKPFSVQMILVDAEGGRIQAGIKKHLMRKFANLLVEGAVYKMAYFEVVRNLGSYRATEHEFRLFFDSRTRVVPTESELIPRFGFSLKNTQDVVDTKGKSDYLMDFMGVLLAVSNEKRIMKEGKLTRVIVLELADEKGRIRCSLFGDFVDMVTNFLSEGKNELPIIIIQLARVSSYKGSIVLQNVMNATKLFWNPQIPEAVDFKNGISSNDIDIDVSVGLIEDNTRVMSLKEEFLDAYPRKTISQLQYILEEGMYIVSGTVERVSEEGLWWYMGGKCQRSVIQDAGGFYCSWCETIVYEVTPRYKLLLEVNDGQEKANFMIFDTDVYSVLQISCKDLMSGMKDLELGPYPEEFKKFLGMECLFKVQIKGNCQTTYGDAFTVKKLCYQEDIVQGFKDENTIRTPEMLKFNPPFTKMQTVASSSAPLSDVTADQLGDSECQVSLNELQESTIHSGDVLFADKRKVDVEGSPPQVPRKRCRVKSIKLERT 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi892g00001 522 PANTHER OS03G0429900 PROTEIN 7 420 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi892g00001 522 SUPERFAMILY Nucleic acid-binding proteins 121 246 IPR012340 -
Sebi892g00001 522 CDD RPA1_DBD_B_like 140 239 - -
Sebi892g00001 522 CDD RPA1_DBD_A_like 19 107 - -
Sebi892g00001 522 Gene3D - 266 426 IPR012340 -
Sebi892g00001 522 Gene3D - 115 250 IPR012340 -
Sebi892g00001 522 MobiDBLite consensus disorder prediction 500 522 - -
Sebi892g00001 522 SUPERFAMILY Nucleic acid-binding proteins 4 111 IPR012340 -
Sebi892g00001 522 Pfam Replication factor-A C terminal domain 290 415 IPR013955 -
Sebi892g00001 522 SUPERFAMILY Nucleic acid-binding proteins 273 417 IPR012340 -
Sebi892g00001 522 Gene3D - 4 112 IPR012340 -
Sebi892g00001 522 Pfam Domain of unknown function DUF223 44 111 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi892g00001 Sebi-Chr892 1721 4301 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi892g00001 8 417 Core DNA Replication Machinery Family AT5G45400 22.426 9.38e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi892g00001 - - lja:Lj6g3v0884310.1 402.905