Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi890g00005 ATGTCCAAAGCGCCAAAATGTTGCTATGAGGAGCAAGAACTAGTGCATTCTGCATTACAGGATGTTATGTCATCCAATTTCTTAGATGGGTTTGTGCCTAATAACCCTTGTAATTCCCTGCTGAAAGCAGAGGAACTCTGCTCAGAGTTTAAGGTACCACAACTTCCACAGGGTGGTAGTAGTGATCTTCAGTGTGAAAAGAAAGCCAATGAGAGGATCATCTCAGCACAGAGCATAGCGGCAAGAGAAAGAAGAAGAAAGATCACTGAGAAGACACAAGAGCTTGGAAAGTTGGTTCCTGGTGGACCTAAGATGAACACAGCTGAGATGTTGCATGCAGCTGCAAGTATGTTAAGTACCTTCAAGCACAAGTTGAAATGCTTCAACTTATGA 393 0.43 MSKAPKCCYEEQELVHSALQDVMSSNFLDGFVPNNPCNSLLKAEELCSEFKVPQLPQGGSSDLQCEKKANERIISAQSIAARERRRKITEKTQELGKLVPGGPKMNTAEMLHAAASMLSTFKHKLKCFNL 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi890g00005 130 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 72 121 IPR011598 GO:0046983
Sebi890g00005 130 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 71 126 IPR036638 GO:0046983
Sebi890g00005 130 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 70 116 IPR045843 GO:0003700|GO:0006355
Sebi890g00005 130 Gene3D - 66 128 IPR036638 GO:0046983
Sebi890g00005 130 SMART finulus 78 127 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi890g00005 Sebi-Chr890 172115 172507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi890g00005 24 130 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G30670 42.991 1.36e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi890g00005 - - gmx:102665938 123.25